Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 EMBP1-201ENST00000458200 901 ntBASIC30.04■■■□□ 2.4
COL17A1Q9UMD9 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
COL17A1Q9UMD9 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC30.03■■■□□ 2.4
COL17A1Q9UMD9 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
COL17A1Q9UMD9 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC30.03■■■□□ 2.4
COL17A1Q9UMD9 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
COL17A1Q9UMD9 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC30.03■■■□□ 2.4
COL17A1Q9UMD9 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC30.03■■■□□ 2.4
COL17A1Q9UMD9 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
COL17A1Q9UMD9 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC30.03■■■□□ 2.4
COL17A1Q9UMD9 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
COL17A1Q9UMD9 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC30.03■■■□□ 2.4
COL17A1Q9UMD9 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
COL17A1Q9UMD9 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC30.03■■■□□ 2.4
COL17A1Q9UMD9 LINC01311-201ENST00000565162 1445 ntBASIC30.02■■■□□ 2.4
COL17A1Q9UMD9 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC30.02■■■□□ 2.4
COL17A1Q9UMD9 STARP1-201ENST00000397973 869 ntBASIC30.02■■■□□ 2.4
COL17A1Q9UMD9 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC30.02■■■□□ 2.4
COL17A1Q9UMD9 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC30.02■■■□□ 2.4
COL17A1Q9UMD9 AL512604.3-201ENST00000569583 964 ntBASIC30.02■■■□□ 2.4
COL17A1Q9UMD9 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
COL17A1Q9UMD9 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
COL17A1Q9UMD9 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC30.02■■■□□ 2.4
COL17A1Q9UMD9 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC30.02■■■□□ 2.4
COL17A1Q9UMD9 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC30.02■■■□□ 2.4
COL17A1Q9UMD9 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC30.02■■■□□ 2.4
COL17A1Q9UMD9 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC30.01■■■□□ 2.4
COL17A1Q9UMD9 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC30.01■■■□□ 2.4
COL17A1Q9UMD9 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
COL17A1Q9UMD9 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC30.01■■■□□ 2.4
COL17A1Q9UMD9 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC30.01■■■□□ 2.4
COL17A1Q9UMD9 SLC25A6P4-201ENST00000586535 553 ntBASIC30.01■■■□□ 2.4
COL17A1Q9UMD9 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
COL17A1Q9UMD9 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC30.01■■■□□ 2.39
COL17A1Q9UMD9 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC30.01■■■□□ 2.39
COL17A1Q9UMD9 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC30.01■■■□□ 2.39
COL17A1Q9UMD9 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC30■■■□□ 2.39
COL17A1Q9UMD9 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC30■■■□□ 2.39
COL17A1Q9UMD9 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC30■■■□□ 2.39
COL17A1Q9UMD9 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC30■■■□□ 2.39
COL17A1Q9UMD9 AC092329.2-201ENST00000598402 547 ntBASIC30■■■□□ 2.39
COL17A1Q9UMD9 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
COL17A1Q9UMD9 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC30■■■□□ 2.39
COL17A1Q9UMD9 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC30■■■□□ 2.39
COL17A1Q9UMD9 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC30■■■□□ 2.39
COL17A1Q9UMD9 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC30■■■□□ 2.39
COL17A1Q9UMD9 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 AC011484.1-201ENST00000377652 1995 ntBASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 PPIH-202ENST00000372549 327 ntTSL 3 BASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 HLA-G-202ENST00000376815 851 ntBASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 HLA-G-203ENST00000376818 1127 ntBASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 AC106795.1-205ENST00000512851 1056 ntBASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC29.99■■■□□ 2.39
COL17A1Q9UMD9 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
COL17A1Q9UMD9 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC29.98■■■□□ 2.39
COL17A1Q9UMD9 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC29.98■■■□□ 2.39
COL17A1Q9UMD9 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
COL17A1Q9UMD9 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
COL17A1Q9UMD9 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC29.98■■■□□ 2.39
COL17A1Q9UMD9 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
COL17A1Q9UMD9 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
COL17A1Q9UMD9 TERT-206ENST00000508104 2486 ntTSL 5 BASIC29.98■■■□□ 2.39
COL17A1Q9UMD9 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
COL17A1Q9UMD9 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC29.98■■■□□ 2.39
COL17A1Q9UMD9 NT5C-210ENST00000582160 860 ntTSL 2 BASIC29.98■■■□□ 2.39
COL17A1Q9UMD9 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC29.98■■■□□ 2.39
COL17A1Q9UMD9 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC29.97■■■□□ 2.39
COL17A1Q9UMD9 AC012676.1-201ENST00000574705 1949 ntBASIC29.97■■■□□ 2.39
COL17A1Q9UMD9 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC29.97■■■□□ 2.39
COL17A1Q9UMD9 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC29.97■■■□□ 2.39
COL17A1Q9UMD9 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC29.97■■■□□ 2.39
COL17A1Q9UMD9 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC29.97■■■□□ 2.39
COL17A1Q9UMD9 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC29.96■■■□□ 2.39
COL17A1Q9UMD9 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC29.96■■■□□ 2.39
COL17A1Q9UMD9 AP002383.4-201ENST00000442518 975 ntBASIC29.96■■■□□ 2.39
COL17A1Q9UMD9 Z85996.1-201ENST00000494644 937 ntBASIC29.96■■■□□ 2.39
COL17A1Q9UMD9 AL160237.2-201ENST00000556165 472 ntBASIC29.96■■■□□ 2.39
COL17A1Q9UMD9 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC29.96■■■□□ 2.39
COL17A1Q9UMD9 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC29.96■■■□□ 2.39
COL17A1Q9UMD9 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC29.96■■■□□ 2.39
COL17A1Q9UMD9 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC29.96■■■□□ 2.39
COL17A1Q9UMD9 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
COL17A1Q9UMD9 GUSBP5-202ENST00000510805 1989 ntBASIC29.96■■■□□ 2.39
COL17A1Q9UMD9 KRT18P1-202ENST00000452408 1331 ntBASIC29.95■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms