Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC15.2■□□□□ 0.02
NOTCH3Q9UM47 CFL2-205ENST00000555765 632 ntTSL 2 BASIC15.2■□□□□ 0.02
NOTCH3Q9UM47 AL590326.2-201ENST00000625139 305 ntBASIC15.2■□□□□ 0.02
NOTCH3Q9UM47 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
NOTCH3Q9UM47 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NOTCH3Q9UM47 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NOTCH3Q9UM47 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NOTCH3Q9UM47 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NOTCH3Q9UM47 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NOTCH3Q9UM47 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
NOTCH3Q9UM47 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NOTCH3Q9UM47 AC005521.1-201ENST00000393351 872 ntBASIC15.2■□□□□ 0.02
NOTCH3Q9UM47 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC15.2■□□□□ 0.02
NOTCH3Q9UM47 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC15.2■□□□□ 0.02
NOTCH3Q9UM47 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC15.2■□□□□ 0.02
NOTCH3Q9UM47 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
NOTCH3Q9UM47 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
NOTCH3Q9UM47 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
NOTCH3Q9UM47 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 AC010947.1-201ENST00000623454 693 ntBASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 LINC01568-207ENST00000641790 1380 ntBASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 Z98882.1-201ENST00000622160 2253 ntBASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 AP002982.1-201ENST00000492365 877 ntBASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 TPM1-226ENST00000560959 925 ntTSL 2 BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
NOTCH3Q9UM47 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NOTCH3Q9UM47 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NOTCH3Q9UM47 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC15.17■□□□□ 0.02
NOTCH3Q9UM47 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC15.17■□□□□ 0.02
NOTCH3Q9UM47 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NOTCH3Q9UM47 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NOTCH3Q9UM47 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC15.17■□□□□ 0.02
NOTCH3Q9UM47 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC15.17■□□□□ 0.02
NOTCH3Q9UM47 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
NOTCH3Q9UM47 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC15.17■□□□□ 0.02
NOTCH3Q9UM47 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC15.17■□□□□ 0.02
NOTCH3Q9UM47 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
NOTCH3Q9UM47 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC15.17■□□□□ 0.02
NOTCH3Q9UM47 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NOTCH3Q9UM47 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NOTCH3Q9UM47 AL121603.2-201ENST00000557373 2117 ntBASIC15.17■□□□□ 0.02
NOTCH3Q9UM47 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
NOTCH3Q9UM47 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC15.16■□□□□ 0.02
NOTCH3Q9UM47 FDX2-207ENST00000494368 584 ntTSL 4 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms