Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC37.59■■■■□ 3.61
SHROOM4Q9ULL8 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC37.59■■■■□ 3.61
SHROOM4Q9ULL8 FSCN1P1-201ENST00000568912 1481 ntBASIC37.59■■■■□ 3.61
SHROOM4Q9ULL8 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC37.59■■■■□ 3.61
SHROOM4Q9ULL8 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC37.59■■■■□ 3.61
SHROOM4Q9ULL8 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC37.58■■■■□ 3.61
SHROOM4Q9ULL8 AC128688.1-201ENST00000487626 519 ntBASIC37.58■■■■□ 3.61
SHROOM4Q9ULL8 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC37.58■■■■□ 3.61
SHROOM4Q9ULL8 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC37.58■■■■□ 3.61
SHROOM4Q9ULL8 AL031985.4-201ENST00000642138 673 ntBASIC37.58■■■■□ 3.61
SHROOM4Q9ULL8 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC37.58■■■■□ 3.61
SHROOM4Q9ULL8 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC37.58■■■■□ 3.61
SHROOM4Q9ULL8 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC37.58■■■■□ 3.61
SHROOM4Q9ULL8 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC37.58■■■■□ 3.61
SHROOM4Q9ULL8 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC37.58■■■■□ 3.61
SHROOM4Q9ULL8 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC37.58■■■■□ 3.61
SHROOM4Q9ULL8 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC37.58■■■■□ 3.61
SHROOM4Q9ULL8 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC37.58■■■■□ 3.61
SHROOM4Q9ULL8 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC37.58■■■■□ 3.61
SHROOM4Q9ULL8 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC37.58■■■■□ 3.61
SHROOM4Q9ULL8 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC37.58■■■■□ 3.61
SHROOM4Q9ULL8 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC37.57■■■■□ 3.61
SHROOM4Q9ULL8 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC37.57■■■■□ 3.61
SHROOM4Q9ULL8 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC37.57■■■■□ 3.61
SHROOM4Q9ULL8 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC37.57■■■■□ 3.61
SHROOM4Q9ULL8 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC37.57■■■■□ 3.6
SHROOM4Q9ULL8 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC37.57■■■■□ 3.6
SHROOM4Q9ULL8 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC37.57■■■■□ 3.6
SHROOM4Q9ULL8 FAM207BP-201ENST00000447172 505 ntBASIC37.57■■■■□ 3.6
SHROOM4Q9ULL8 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC37.57■■■■□ 3.6
SHROOM4Q9ULL8 GRAMD4P8-201ENST00000605465 1115 ntBASIC37.57■■■■□ 3.6
SHROOM4Q9ULL8 AL445675.2-201ENST00000620291 557 ntBASIC37.57■■■■□ 3.6
SHROOM4Q9ULL8 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC37.56■■■■□ 3.6
SHROOM4Q9ULL8 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC37.56■■■■□ 3.6
SHROOM4Q9ULL8 HMGA1P5-201ENST00000412453 271 ntBASIC37.56■■■■□ 3.6
SHROOM4Q9ULL8 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC37.56■■■■□ 3.6
SHROOM4Q9ULL8 KRT8P20-201ENST00000423953 1409 ntBASIC37.56■■■■□ 3.6
SHROOM4Q9ULL8 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC37.55■■■■□ 3.6
SHROOM4Q9ULL8 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC37.55■■■■□ 3.6
SHROOM4Q9ULL8 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC37.55■■■■□ 3.6
SHROOM4Q9ULL8 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC37.54■■■■□ 3.6
SHROOM4Q9ULL8 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC37.54■■■■□ 3.6
SHROOM4Q9ULL8 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC37.54■■■■□ 3.6
SHROOM4Q9ULL8 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC37.54■■■■□ 3.6
SHROOM4Q9ULL8 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC37.54■■■■□ 3.6
SHROOM4Q9ULL8 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC37.54■■■■□ 3.6
SHROOM4Q9ULL8 PPP1R14BP5-201ENST00000440334 435 ntBASIC37.54■■■■□ 3.6
SHROOM4Q9ULL8 B3GAT3P1-201ENST00000471720 806 ntBASIC37.54■■■■□ 3.6
SHROOM4Q9ULL8 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC37.54■■■■□ 3.6
SHROOM4Q9ULL8 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC37.54■■■■□ 3.6
SHROOM4Q9ULL8 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC37.54■■■■□ 3.6
SHROOM4Q9ULL8 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC37.54■■■■□ 3.6
SHROOM4Q9ULL8 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC37.54■■■■□ 3.6
SHROOM4Q9ULL8 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC37.54■■■■□ 3.6
SHROOM4Q9ULL8 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC37.53■■■■□ 3.6
SHROOM4Q9ULL8 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC37.53■■■■□ 3.6
SHROOM4Q9ULL8 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC37.53■■■■□ 3.6
SHROOM4Q9ULL8 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC37.53■■■■□ 3.6
SHROOM4Q9ULL8 AL138966.2-201ENST00000621997 464 ntBASIC37.53■■■■□ 3.6
SHROOM4Q9ULL8 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC37.52■■■■□ 3.6
SHROOM4Q9ULL8 BET1L-202ENST00000332865 533 ntTSL 5 BASIC37.52■■■■□ 3.6
SHROOM4Q9ULL8 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC37.52■■■■□ 3.6
SHROOM4Q9ULL8 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC37.52■■■■□ 3.6
SHROOM4Q9ULL8 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC37.52■■■■□ 3.6
SHROOM4Q9ULL8 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC37.52■■■■□ 3.6
SHROOM4Q9ULL8 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC37.52■■■■□ 3.6
SHROOM4Q9ULL8 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC37.52■■■■□ 3.6
SHROOM4Q9ULL8 IPPK-202ENST00000375522 882 ntTSL 3 BASIC37.52■■■■□ 3.6
SHROOM4Q9ULL8 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC37.52■■■■□ 3.6
SHROOM4Q9ULL8 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC37.51■■■■□ 3.6
SHROOM4Q9ULL8 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC37.51■■■■□ 3.6
SHROOM4Q9ULL8 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC37.51■■■■□ 3.6
SHROOM4Q9ULL8 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC37.51■■■■□ 3.6
SHROOM4Q9ULL8 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC37.51■■■■□ 3.6
SHROOM4Q9ULL8 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC37.51■■■■□ 3.6
SHROOM4Q9ULL8 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC37.51■■■■□ 3.6
SHROOM4Q9ULL8 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC37.51■■■■□ 3.6
SHROOM4Q9ULL8 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC37.51■■■■□ 3.59
SHROOM4Q9ULL8 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC37.51■■■■□ 3.59
SHROOM4Q9ULL8 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC37.51■■■■□ 3.59
SHROOM4Q9ULL8 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC37.51■■■■□ 3.59
SHROOM4Q9ULL8 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC37.5■■■■□ 3.59
SHROOM4Q9ULL8 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC37.5■■■■□ 3.59
SHROOM4Q9ULL8 KRT8P17-201ENST00000453110 1448 ntBASIC37.5■■■■□ 3.59
SHROOM4Q9ULL8 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC37.5■■■■□ 3.59
SHROOM4Q9ULL8 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC37.5■■■■□ 3.59
SHROOM4Q9ULL8 HLA-G-202ENST00000376815 851 ntBASIC37.5■■■■□ 3.59
SHROOM4Q9ULL8 HLA-G-203ENST00000376818 1127 ntBASIC37.5■■■■□ 3.59
SHROOM4Q9ULL8 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC37.5■■■■□ 3.59
SHROOM4Q9ULL8 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC37.5■■■■□ 3.59
SHROOM4Q9ULL8 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC37.5■■■■□ 3.59
SHROOM4Q9ULL8 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC37.5■■■■□ 3.59
SHROOM4Q9ULL8 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC37.49■■■■□ 3.59
SHROOM4Q9ULL8 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC37.49■■■■□ 3.59
SHROOM4Q9ULL8 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC37.49■■■■□ 3.59
SHROOM4Q9ULL8 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC37.49■■■■□ 3.59
SHROOM4Q9ULL8 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC37.49■■■■□ 3.59
SHROOM4Q9ULL8 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC37.49■■■■□ 3.59
SHROOM4Q9ULL8 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC37.49■■■■□ 3.59
SHROOM4Q9ULL8 RNF152P1-201ENST00000397754 604 ntBASIC37.49■■■■□ 3.59
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms