Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS28Q9UK41 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS28Q9UK41 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.28■□□□□ 0.84
VPS28Q9UK41 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.28■□□□□ 0.84
VPS28Q9UK41 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
VPS28Q9UK41 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.28■□□□□ 0.84
VPS28Q9UK41 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.27■□□□□ 0.84
VPS28Q9UK41 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.27■□□□□ 0.84
VPS28Q9UK41 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS28Q9UK41 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.27■□□□□ 0.84
VPS28Q9UK41 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
VPS28Q9UK41 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.27■□□□□ 0.84
VPS28Q9UK41 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS28Q9UK41 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.27■□□□□ 0.84
VPS28Q9UK41 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
VPS28Q9UK41 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS28Q9UK41 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
VPS28Q9UK41 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
VPS28Q9UK41 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS28Q9UK41 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
VPS28Q9UK41 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.27■□□□□ 0.84
VPS28Q9UK41 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS28Q9UK41 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.27■□□□□ 0.84
VPS28Q9UK41 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.27■□□□□ 0.84
VPS28Q9UK41 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS28Q9UK41 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.27■□□□□ 0.84
VPS28Q9UK41 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.27■□□□□ 0.84
VPS28Q9UK41 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.27■□□□□ 0.84
VPS28Q9UK41 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS28Q9UK41 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.27■□□□□ 0.84
VPS28Q9UK41 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.27■□□□□ 0.83
VPS28Q9UK41 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
VPS28Q9UK41 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.27■□□□□ 0.83
VPS28Q9UK41 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.26■□□□□ 0.83
VPS28Q9UK41 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.26■□□□□ 0.83
VPS28Q9UK41 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
VPS28Q9UK41 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS28Q9UK41 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS28Q9UK41 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS28Q9UK41 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS28Q9UK41 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
VPS28Q9UK41 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.26■□□□□ 0.83
VPS28Q9UK41 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS28Q9UK41 PHGDH-210ENST00000641115 1638 ntBASIC20.26■□□□□ 0.83
VPS28Q9UK41 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.26■□□□□ 0.83
VPS28Q9UK41 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
VPS28Q9UK41 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
VPS28Q9UK41 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS28Q9UK41 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
VPS28Q9UK41 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS28Q9UK41 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS28Q9UK41 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS28Q9UK41 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.26■□□□□ 0.83
VPS28Q9UK41 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
VPS28Q9UK41 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS28Q9UK41 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.25■□□□□ 0.83
VPS28Q9UK41 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS28Q9UK41 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.25■□□□□ 0.83
VPS28Q9UK41 AL391422.3-201ENST00000603791 2761 ntBASIC20.25■□□□□ 0.83
VPS28Q9UK41 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VPS28Q9UK41 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS28Q9UK41 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS28Q9UK41 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS28Q9UK41 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS28Q9UK41 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.25■□□□□ 0.83
VPS28Q9UK41 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.25■□□□□ 0.83
VPS28Q9UK41 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VPS28Q9UK41 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS28Q9UK41 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.25■□□□□ 0.83
VPS28Q9UK41 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.25■□□□□ 0.83
VPS28Q9UK41 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS28Q9UK41 AC116351.2-201ENST00000606540 1585 ntBASIC20.25■□□□□ 0.83
VPS28Q9UK41 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS28Q9UK41 NBPF21P-201ENST00000425093 1451 ntBASIC20.24■□□□□ 0.83
VPS28Q9UK41 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
VPS28Q9UK41 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS28Q9UK41 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS28Q9UK41 AL162377.1-201ENST00000618844 1793 ntBASIC20.24■□□□□ 0.83
VPS28Q9UK41 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS28Q9UK41 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS28Q9UK41 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
VPS28Q9UK41 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS28Q9UK41 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS28Q9UK41 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS28Q9UK41 CD37-204ENST00000535669 1674 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS28Q9UK41 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS28Q9UK41 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS28Q9UK41 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS28Q9UK41 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.24■□□□□ 0.83
VPS28Q9UK41 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS28Q9UK41 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS28Q9UK41 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.24■□□□□ 0.83
VPS28Q9UK41 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS28Q9UK41 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS28Q9UK41 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS28Q9UK41 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.24■□□□□ 0.83
VPS28Q9UK41 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS28Q9UK41 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS28Q9UK41 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS28Q9UK41 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms