Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC21.27■■□□□ 1
CNTN3Q9P232 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC21.27■■□□□ 1
CNTN3Q9P232 PENK-204ENST00000518770 863 ntTSL 2 BASIC21.27■■□□□ 1
CNTN3Q9P232 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC21.27■■□□□ 1
CNTN3Q9P232 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC21.27■■□□□ 1
CNTN3Q9P232 GRAP-204ENST00000573099 846 ntTSL 3 BASIC21.27■■□□□ 1
CNTN3Q9P232 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC21.27■■□□□ 1
CNTN3Q9P232 AL691432.2-201ENST00000607222 2038 ntBASIC21.27■■□□□ 1
CNTN3Q9P232 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CNTN3Q9P232 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CNTN3Q9P232 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC21.26■□□□□ 0.99
CNTN3Q9P232 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CNTN3Q9P232 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC21.26■□□□□ 0.99
CNTN3Q9P232 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC21.26■□□□□ 0.99
CNTN3Q9P232 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC21.26■□□□□ 0.99
CNTN3Q9P232 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
CNTN3Q9P232 AC073195.1-201ENST00000607241 877 ntBASIC21.26■□□□□ 0.99
CNTN3Q9P232 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CNTN3Q9P232 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
CNTN3Q9P232 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
CNTN3Q9P232 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
CNTN3Q9P232 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
CNTN3Q9P232 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CNTN3Q9P232 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CNTN3Q9P232 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC21.25■□□□□ 0.99
CNTN3Q9P232 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CNTN3Q9P232 LINC01006-201ENST00000333319 2292 ntBASIC21.25■□□□□ 0.99
CNTN3Q9P232 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.25■□□□□ 0.99
CNTN3Q9P232 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
CNTN3Q9P232 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CNTN3Q9P232 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CNTN3Q9P232 NIFKP9-201ENST00000419265 221 ntBASIC21.25■□□□□ 0.99
CNTN3Q9P232 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CNTN3Q9P232 AP002982.1-201ENST00000492365 877 ntBASIC21.25■□□□□ 0.99
CNTN3Q9P232 DHDH-203ENST00000522614 776 ntTSL 5 BASIC21.25■□□□□ 0.99
CNTN3Q9P232 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC21.25■□□□□ 0.99
CNTN3Q9P232 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC21.25■□□□□ 0.99
CNTN3Q9P232 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC21.25■□□□□ 0.99
CNTN3Q9P232 MIR4785-201ENST00000585005 73 ntBASIC21.25■□□□□ 0.99
CNTN3Q9P232 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC21.25■□□□□ 0.99
CNTN3Q9P232 CD177P1-201ENST00000606252 935 ntBASIC21.25■□□□□ 0.99
CNTN3Q9P232 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.25■□□□□ 0.99
CNTN3Q9P232 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CNTN3Q9P232 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CNTN3Q9P232 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC21.25■□□□□ 0.99
CNTN3Q9P232 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CNTN3Q9P232 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
CNTN3Q9P232 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.24■□□□□ 0.99
CNTN3Q9P232 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.24■□□□□ 0.99
CNTN3Q9P232 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CNTN3Q9P232 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CNTN3Q9P232 AC099778.1-201ENST00000568593 1911 ntBASIC21.24■□□□□ 0.99
CNTN3Q9P232 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CNTN3Q9P232 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CNTN3Q9P232 AL391422.3-201ENST00000603791 2761 ntBASIC21.24■□□□□ 0.99
CNTN3Q9P232 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CNTN3Q9P232 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC21.24■□□□□ 0.99
CNTN3Q9P232 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CNTN3Q9P232 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CNTN3Q9P232 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
CNTN3Q9P232 TUBB8P6-201ENST00000436895 1288 ntBASIC21.24■□□□□ 0.99
CNTN3Q9P232 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC21.24■□□□□ 0.99
CNTN3Q9P232 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC21.24■□□□□ 0.99
CNTN3Q9P232 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
CNTN3Q9P232 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC21.24■□□□□ 0.99
CNTN3Q9P232 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CNTN3Q9P232 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CNTN3Q9P232 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CNTN3Q9P232 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CNTN3Q9P232 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CNTN3Q9P232 KRT17P2-201ENST00000300992 1314 ntBASIC21.24■□□□□ 0.99
CNTN3Q9P232 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CNTN3Q9P232 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CNTN3Q9P232 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.23■□□□□ 0.99
CNTN3Q9P232 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CNTN3Q9P232 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CNTN3Q9P232 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CNTN3Q9P232 TMEM179-206ENST00000616017 1645 ntBASIC21.23■□□□□ 0.99
CNTN3Q9P232 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC21.23■□□□□ 0.99
CNTN3Q9P232 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CNTN3Q9P232 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC21.23■□□□□ 0.99
CNTN3Q9P232 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CNTN3Q9P232 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
CNTN3Q9P232 SRI-203ENST00000419179 1307 ntTSL 2 BASIC21.23■□□□□ 0.99
CNTN3Q9P232 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CNTN3Q9P232 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CNTN3Q9P232 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CNTN3Q9P232 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC21.22■□□□□ 0.99
CNTN3Q9P232 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC21.22■□□□□ 0.99
CNTN3Q9P232 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CNTN3Q9P232 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC21.22■□□□□ 0.99
CNTN3Q9P232 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
CNTN3Q9P232 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC21.22■□□□□ 0.99
CNTN3Q9P232 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
CNTN3Q9P232 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CNTN3Q9P232 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC21.22■□□□□ 0.99
CNTN3Q9P232 FAM197Y1-201ENST00000421178 764 ntBASIC21.22■□□□□ 0.99
CNTN3Q9P232 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.22■□□□□ 0.99
CNTN3Q9P232 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
CNTN3Q9P232 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms