Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDCA3Q99618 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
CDCA3Q99618 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.61■□□□□ 0.89
CDCA3Q99618 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.61■□□□□ 0.89
CDCA3Q99618 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.61■□□□□ 0.89
CDCA3Q99618 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDCA3Q99618 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.61■□□□□ 0.89
CDCA3Q99618 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDCA3Q99618 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.61■□□□□ 0.89
CDCA3Q99618 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.61■□□□□ 0.89
CDCA3Q99618 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.61■□□□□ 0.89
CDCA3Q99618 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDCA3Q99618 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDCA3Q99618 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDCA3Q99618 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDCA3Q99618 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDCA3Q99618 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.6■□□□□ 0.89
CDCA3Q99618 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDCA3Q99618 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CDCA3Q99618 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.6■□□□□ 0.89
CDCA3Q99618 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDCA3Q99618 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDCA3Q99618 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDCA3Q99618 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.6■□□□□ 0.89
CDCA3Q99618 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
CDCA3Q99618 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC20.6■□□□□ 0.89
CDCA3Q99618 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC20.6■□□□□ 0.89
CDCA3Q99618 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.6■□□□□ 0.89
CDCA3Q99618 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC20.6■□□□□ 0.89
CDCA3Q99618 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
CDCA3Q99618 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC20.6■□□□□ 0.89
CDCA3Q99618 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CDCA3Q99618 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.6■□□□□ 0.89
CDCA3Q99618 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CDCA3Q99618 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CDCA3Q99618 PLK5-205ENST00000642079 1969 ntBASIC20.59■□□□□ 0.89
CDCA3Q99618 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.59■□□□□ 0.89
CDCA3Q99618 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
CDCA3Q99618 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDCA3Q99618 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
CDCA3Q99618 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDCA3Q99618 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC20.59■□□□□ 0.89
CDCA3Q99618 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDCA3Q99618 TPM4P1-201ENST00000436100 807 ntBASIC20.59■□□□□ 0.89
CDCA3Q99618 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDCA3Q99618 Z85996.1-201ENST00000494644 937 ntBASIC20.59■□□□□ 0.89
CDCA3Q99618 AC140113.3-201ENST00000605663 199 ntBASIC20.59■□□□□ 0.89
CDCA3Q99618 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.59■□□□□ 0.89
CDCA3Q99618 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.59■□□□□ 0.89
CDCA3Q99618 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDCA3Q99618 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDCA3Q99618 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
CDCA3Q99618 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDCA3Q99618 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDCA3Q99618 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDCA3Q99618 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDCA3Q99618 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDCA3Q99618 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDCA3Q99618 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CDCA3Q99618 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDCA3Q99618 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CDCA3Q99618 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.89
CDCA3Q99618 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
CDCA3Q99618 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
CDCA3Q99618 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.58■□□□□ 0.89
CDCA3Q99618 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.58■□□□□ 0.89
CDCA3Q99618 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.58■□□□□ 0.89
CDCA3Q99618 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDCA3Q99618 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDCA3Q99618 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC20.58■□□□□ 0.89
CDCA3Q99618 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.58■□□□□ 0.89
CDCA3Q99618 AL671277.2-201ENST00000458060 996 ntBASIC20.58■□□□□ 0.89
CDCA3Q99618 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.58■□□□□ 0.89
CDCA3Q99618 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
CDCA3Q99618 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
CDCA3Q99618 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CDCA3Q99618 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CDCA3Q99618 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.58■□□□□ 0.88
CDCA3Q99618 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.58■□□□□ 0.88
CDCA3Q99618 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CDCA3Q99618 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.58■□□□□ 0.88
CDCA3Q99618 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.57■□□□□ 0.88
CDCA3Q99618 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.57■□□□□ 0.88
CDCA3Q99618 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDCA3Q99618 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDCA3Q99618 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CDCA3Q99618 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDCA3Q99618 DAP-202ENST00000432074 1048 ntTSL 2 BASIC20.57■□□□□ 0.88
CDCA3Q99618 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC20.57■□□□□ 0.88
CDCA3Q99618 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.57■□□□□ 0.88
CDCA3Q99618 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDCA3Q99618 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDCA3Q99618 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC20.57■□□□□ 0.88
CDCA3Q99618 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDCA3Q99618 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
CDCA3Q99618 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDCA3Q99618 FP700111.2-201ENST00000619190 1892 ntBASIC20.56■□□□□ 0.88
CDCA3Q99618 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CDCA3Q99618 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDCA3Q99618 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms