Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP39Q53GS9 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP39Q53GS9 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP39Q53GS9 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP39Q53GS9 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
USP39Q53GS9 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP39Q53GS9 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.04■□□□□ 0.8
USP39Q53GS9 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP39Q53GS9 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.04■□□□□ 0.8
USP39Q53GS9 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.04■□□□□ 0.8
USP39Q53GS9 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.04■□□□□ 0.8
USP39Q53GS9 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP39Q53GS9 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.04■□□□□ 0.8
USP39Q53GS9 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.04■□□□□ 0.8
USP39Q53GS9 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.04■□□□□ 0.8
USP39Q53GS9 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
USP39Q53GS9 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP39Q53GS9 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
USP39Q53GS9 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP39Q53GS9 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP39Q53GS9 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP39Q53GS9 KRT18P22-201ENST00000402024 1347 ntBASIC20.03■□□□□ 0.8
USP39Q53GS9 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP39Q53GS9 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP39Q53GS9 KRT8P9-201ENST00000558927 1449 ntBASIC20.03■□□□□ 0.8
USP39Q53GS9 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP39Q53GS9 FEM1AP1-201ENST00000431297 1995 ntBASIC20.03■□□□□ 0.8
USP39Q53GS9 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.03■□□□□ 0.8
USP39Q53GS9 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.03■□□□□ 0.8
USP39Q53GS9 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP39Q53GS9 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP39Q53GS9 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.03■□□□□ 0.8
USP39Q53GS9 KSR1P1-201ENST00000446298 240 ntBASIC20.03■□□□□ 0.8
USP39Q53GS9 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.03■□□□□ 0.8
USP39Q53GS9 TPM1-226ENST00000560959 925 ntTSL 2 BASIC20.03■□□□□ 0.8
USP39Q53GS9 CR392000.1-201ENST00000624770 1228 ntBASIC20.03■□□□□ 0.8
USP39Q53GS9 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP39Q53GS9 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP39Q53GS9 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
USP39Q53GS9 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.03■□□□□ 0.8
USP39Q53GS9 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
USP39Q53GS9 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.03■□□□□ 0.8
USP39Q53GS9 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP39Q53GS9 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USP39Q53GS9 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC20.02■□□□□ 0.8
USP39Q53GS9 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.02■□□□□ 0.8
USP39Q53GS9 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP39Q53GS9 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USP39Q53GS9 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.02■□□□□ 0.8
USP39Q53GS9 AC113347.1-201ENST00000413321 391 ntBASIC20.02■□□□□ 0.8
USP39Q53GS9 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.02■□□□□ 0.8
USP39Q53GS9 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USP39Q53GS9 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.02■□□□□ 0.8
USP39Q53GS9 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC20.02■□□□□ 0.8
USP39Q53GS9 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
USP39Q53GS9 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.02■□□□□ 0.8
USP39Q53GS9 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.02■□□□□ 0.8
USP39Q53GS9 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC20.02■□□□□ 0.8
USP39Q53GS9 PLK5-205ENST00000642079 1969 ntBASIC20.02■□□□□ 0.8
USP39Q53GS9 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
USP39Q53GS9 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
USP39Q53GS9 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
USP39Q53GS9 SLC25A24-204ENST00000569674 2357 ntBASIC20.01■□□□□ 0.79
USP39Q53GS9 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.01■□□□□ 0.79
USP39Q53GS9 AC006128.1-201ENST00000624704 1661 ntBASIC20.01■□□□□ 0.79
USP39Q53GS9 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP39Q53GS9 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.01■□□□□ 0.79
USP39Q53GS9 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC20.01■□□□□ 0.79
USP39Q53GS9 AL137013.1-201ENST00000432946 1228 ntBASIC20.01■□□□□ 0.79
USP39Q53GS9 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP39Q53GS9 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.01■□□□□ 0.79
USP39Q53GS9 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.01■□□□□ 0.79
USP39Q53GS9 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP39Q53GS9 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP39Q53GS9 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP39Q53GS9 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP39Q53GS9 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP39Q53GS9 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.01■□□□□ 0.79
USP39Q53GS9 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
USP39Q53GS9 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USP39Q53GS9 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
USP39Q53GS9 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP39Q53GS9 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP39Q53GS9 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
USP39Q53GS9 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP39Q53GS9 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
USP39Q53GS9 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20■□□□□ 0.79
USP39Q53GS9 LINC01006-201ENST00000333319 2292 ntBASIC20■□□□□ 0.79
USP39Q53GS9 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20■□□□□ 0.79
USP39Q53GS9 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20■□□□□ 0.79
USP39Q53GS9 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP39Q53GS9 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP39Q53GS9 AC116562.2-201ENST00000507042 360 ntBASIC20■□□□□ 0.79
USP39Q53GS9 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20■□□□□ 0.79
USP39Q53GS9 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20■□□□□ 0.79
USP39Q53GS9 FITM1-202ENST00000559294 800 ntBASIC20■□□□□ 0.79
USP39Q53GS9 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
USP39Q53GS9 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
USP39Q53GS9 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
USP39Q53GS9 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms