Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDH1Q08174 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
PCDH1Q08174 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.03■□□□□ 0.64
PCDH1Q08174 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.02■□□□□ 0.64
PCDH1Q08174 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH1Q08174 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
PCDH1Q08174 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH1Q08174 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH1Q08174 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH1Q08174 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH1Q08174 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.02■□□□□ 0.64
PCDH1Q08174 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.02■□□□□ 0.64
PCDH1Q08174 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH1Q08174 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH1Q08174 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH1Q08174 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH1Q08174 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
PCDH1Q08174 SLC29A4P2-201ENST00000504749 1089 ntBASIC19.02■□□□□ 0.64
PCDH1Q08174 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.02■□□□□ 0.64
PCDH1Q08174 AC098934.4-201ENST00000564127 592 ntBASIC19.02■□□□□ 0.64
PCDH1Q08174 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
PCDH1Q08174 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.02■□□□□ 0.64
PCDH1Q08174 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.02■□□□□ 0.64
PCDH1Q08174 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
PCDH1Q08174 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.02■□□□□ 0.63
PCDH1Q08174 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
PCDH1Q08174 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
PCDH1Q08174 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH1Q08174 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.01■□□□□ 0.63
PCDH1Q08174 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
PCDH1Q08174 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH1Q08174 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH1Q08174 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
PCDH1Q08174 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.01■□□□□ 0.63
PCDH1Q08174 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.01■□□□□ 0.63
PCDH1Q08174 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
PCDH1Q08174 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH1Q08174 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH1Q08174 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH1Q08174 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
PCDH1Q08174 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.01■□□□□ 0.63
PCDH1Q08174 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.01■□□□□ 0.63
PCDH1Q08174 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH1Q08174 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH1Q08174 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.01■□□□□ 0.63
PCDH1Q08174 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
PCDH1Q08174 AL158211.5-201ENST00000623583 2518 ntBASIC19.01■□□□□ 0.63
PCDH1Q08174 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.01■□□□□ 0.63
PCDH1Q08174 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19■□□□□ 0.63
PCDH1Q08174 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
PCDH1Q08174 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC19■□□□□ 0.63
PCDH1Q08174 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19■□□□□ 0.63
PCDH1Q08174 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDH1Q08174 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDH1Q08174 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDH1Q08174 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC19■□□□□ 0.63
PCDH1Q08174 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19■□□□□ 0.63
PCDH1Q08174 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
PCDH1Q08174 PNMA6B-201ENST00000538162 1200 ntBASIC19■□□□□ 0.63
PCDH1Q08174 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC19■□□□□ 0.63
PCDH1Q08174 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
PCDH1Q08174 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
PCDH1Q08174 AC092368.3-202ENST00000574180 1591 ntBASIC19■□□□□ 0.63
PCDH1Q08174 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDH1Q08174 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDH1Q08174 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
PCDH1Q08174 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
PCDH1Q08174 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDH1Q08174 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19■□□□□ 0.63
PCDH1Q08174 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
PCDH1Q08174 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
PCDH1Q08174 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
PCDH1Q08174 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
PCDH1Q08174 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
PCDH1Q08174 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19■□□□□ 0.63
PCDH1Q08174 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19■□□□□ 0.63
PCDH1Q08174 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDH1Q08174 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC18.99■□□□□ 0.63
PCDH1Q08174 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDH1Q08174 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDH1Q08174 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDH1Q08174 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDH1Q08174 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PCDH1Q08174 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.99■□□□□ 0.63
PCDH1Q08174 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.99■□□□□ 0.63
PCDH1Q08174 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDH1Q08174 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.99■□□□□ 0.63
PCDH1Q08174 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.99■□□□□ 0.63
PCDH1Q08174 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PCDH1Q08174 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.99■□□□□ 0.63
PCDH1Q08174 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
PCDH1Q08174 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDH1Q08174 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PCDH1Q08174 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDH1Q08174 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
PCDH1Q08174 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
PCDH1Q08174 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.99■□□□□ 0.63
PCDH1Q08174 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDH1Q08174 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
PCDH1Q08174 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms