Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC21.11■□□□□ 0.97
VCPP55072 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.11■□□□□ 0.97
VCPP55072 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VCPP55072 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VCPP55072 AC110285.5-201ENST00000611501 352 ntBASIC21.11■□□□□ 0.97
VCPP55072 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC21.11■□□□□ 0.97
VCPP55072 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VCPP55072 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VCPP55072 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
VCPP55072 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VCPP55072 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VCPP55072 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VCPP55072 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VCPP55072 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.1■□□□□ 0.97
VCPP55072 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
VCPP55072 KRASP1-201ENST00000407852 552 ntBASIC21.1■□□□□ 0.97
VCPP55072 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC21.1■□□□□ 0.97
VCPP55072 HES2-205ENST00000487437 968 ntTSL 3 BASIC21.1■□□□□ 0.97
VCPP55072 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
VCPP55072 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC21.1■□□□□ 0.97
VCPP55072 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
VCPP55072 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC21.1■□□□□ 0.97
VCPP55072 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.1■□□□□ 0.97
VCPP55072 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC21.1■□□□□ 0.97
VCPP55072 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.1■□□□□ 0.97
VCPP55072 MIR2861-201ENST00000636310 90 ntBASIC21.1■□□□□ 0.97
VCPP55072 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VCPP55072 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VCPP55072 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
VCPP55072 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VCPP55072 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VCPP55072 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
VCPP55072 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC21.1■□□□□ 0.97
VCPP55072 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.1■□□□□ 0.97
VCPP55072 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
VCPP55072 AC112907.3-201ENST00000577781 2400 ntBASIC21.09■□□□□ 0.97
VCPP55072 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VCPP55072 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.09■□□□□ 0.97
VCPP55072 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VCPP55072 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.09■□□□□ 0.97
VCPP55072 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VCPP55072 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VCPP55072 MMP23A-201ENST00000234610 1017 ntBASIC21.09■□□□□ 0.97
VCPP55072 CRAT-202ENST00000393384 973 ntTSL 2 BASIC21.09■□□□□ 0.97
VCPP55072 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.09■□□□□ 0.97
VCPP55072 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21.09■□□□□ 0.97
VCPP55072 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VCPP55072 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
VCPP55072 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC21.09■□□□□ 0.97
VCPP55072 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
VCPP55072 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VCPP55072 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VCPP55072 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC21.09■□□□□ 0.97
VCPP55072 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VCPP55072 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC21.09■□□□□ 0.97
VCPP55072 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VCPP55072 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
VCPP55072 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.09■□□□□ 0.97
VCPP55072 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.09■□□□□ 0.97
VCPP55072 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VCPP55072 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VCPP55072 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC21.09■□□□□ 0.97
VCPP55072 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
VCPP55072 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
VCPP55072 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
VCPP55072 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
VCPP55072 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
VCPP55072 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC21.08■□□□□ 0.97
VCPP55072 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC21.08■□□□□ 0.97
VCPP55072 NME3-204ENST00000563498 920 ntTSL 2 BASIC21.08■□□□□ 0.97
VCPP55072 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
VCPP55072 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VCPP55072 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VCPP55072 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VCPP55072 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VCPP55072 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VCPP55072 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VCPP55072 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VCPP55072 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC21.08■□□□□ 0.96
VCPP55072 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.08■□□□□ 0.96
VCPP55072 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
VCPP55072 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.07■□□□□ 0.96
VCPP55072 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.07■□□□□ 0.96
VCPP55072 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC21.07■□□□□ 0.96
VCPP55072 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
VCPP55072 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
VCPP55072 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC21.07■□□□□ 0.96
VCPP55072 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.07■□□□□ 0.96
VCPP55072 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC21.07■□□□□ 0.96
VCPP55072 RARRES2P10-201ENST00000564312 460 ntBASIC21.07■□□□□ 0.96
VCPP55072 P4HB-223ENST00000576390 439 ntTSL 4 BASIC21.07■□□□□ 0.96
VCPP55072 AC026471.5-201ENST00000615068 467 ntBASIC21.07■□□□□ 0.96
VCPP55072 MIR6786-201ENST00000616843 113 ntBASIC21.07■□□□□ 0.96
VCPP55072 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC21.07■□□□□ 0.96
VCPP55072 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.07■□□□□ 0.96
VCPP55072 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VCPP55072 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VCPP55072 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
VCPP55072 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC21.06■□□□□ 0.96
VCPP55072 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms