Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NEK3P51956 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
NEK3P51956 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
NEK3P51956 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NEK3P51956 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
NEK3P51956 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
NEK3P51956 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NEK3P51956 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.3■□□□□ 0.84
NEK3P51956 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.3■□□□□ 0.84
NEK3P51956 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
NEK3P51956 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
NEK3P51956 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NEK3P51956 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
NEK3P51956 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NEK3P51956 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.3■□□□□ 0.84
NEK3P51956 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.3■□□□□ 0.84
NEK3P51956 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
NEK3P51956 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.3■□□□□ 0.84
NEK3P51956 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NEK3P51956 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NEK3P51956 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NEK3P51956 GCSHP5-201ENST00000443090 522 ntBASIC20.3■□□□□ 0.84
NEK3P51956 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
NEK3P51956 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.3■□□□□ 0.84
NEK3P51956 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
NEK3P51956 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
NEK3P51956 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
NEK3P51956 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.3■□□□□ 0.84
NEK3P51956 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
NEK3P51956 AL158211.5-201ENST00000623583 2518 ntBASIC20.29■□□□□ 0.84
NEK3P51956 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.29■□□□□ 0.84
NEK3P51956 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NEK3P51956 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NEK3P51956 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.29■□□□□ 0.84
NEK3P51956 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
NEK3P51956 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.29■□□□□ 0.84
NEK3P51956 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NEK3P51956 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NEK3P51956 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NEK3P51956 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
NEK3P51956 POM121L13P-201ENST00000422362 380 ntBASIC20.29■□□□□ 0.84
NEK3P51956 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NEK3P51956 AC142381.4-202ENST00000563973 229 ntBASIC20.29■□□□□ 0.84
NEK3P51956 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
NEK3P51956 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
NEK3P51956 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
NEK3P51956 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.29■□□□□ 0.84
NEK3P51956 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NEK3P51956 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.29■□□□□ 0.84
NEK3P51956 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NEK3P51956 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
NEK3P51956 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
NEK3P51956 BX323043.1-201ENST00000641006 1765 ntBASIC20.29■□□□□ 0.84
NEK3P51956 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.28■□□□□ 0.84
NEK3P51956 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NEK3P51956 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
NEK3P51956 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NEK3P51956 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.28■□□□□ 0.84
NEK3P51956 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
NEK3P51956 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NEK3P51956 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NEK3P51956 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.28■□□□□ 0.84
NEK3P51956 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.28■□□□□ 0.84
NEK3P51956 RPS2P52-201ENST00000469610 820 ntBASIC20.28■□□□□ 0.84
NEK3P51956 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.28■□□□□ 0.84
NEK3P51956 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
NEK3P51956 AC006557.6-201ENST00000623071 864 ntBASIC20.28■□□□□ 0.84
NEK3P51956 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
NEK3P51956 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NEK3P51956 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
NEK3P51956 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NEK3P51956 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.28■□□□□ 0.84
NEK3P51956 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NEK3P51956 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NEK3P51956 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.28■□□□□ 0.84
NEK3P51956 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
NEK3P51956 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NEK3P51956 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.27■□□□□ 0.84
NEK3P51956 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
NEK3P51956 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.27■□□□□ 0.84
NEK3P51956 AC018445.3-201ENST00000624177 1945 ntBASIC20.27■□□□□ 0.84
NEK3P51956 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NEK3P51956 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
NEK3P51956 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NEK3P51956 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NEK3P51956 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NEK3P51956 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NEK3P51956 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NEK3P51956 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NEK3P51956 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
NEK3P51956 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.27■□□□□ 0.84
NEK3P51956 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NEK3P51956 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.27■□□□□ 0.84
NEK3P51956 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
NEK3P51956 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.27■□□□□ 0.84
NEK3P51956 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.84
NEK3P51956 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NEK3P51956 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.27■□□□□ 0.84
NEK3P51956 AL158047.1-201ENST00000445918 881 ntBASIC20.27■□□□□ 0.84
NEK3P51956 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.27■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms