Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIG3P49916 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.62■□□□□ 0.89
LIG3P49916 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIG3P49916 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
LIG3P49916 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIG3P49916 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
LIG3P49916 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.62■□□□□ 0.89
LIG3P49916 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
LIG3P49916 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.62■□□□□ 0.89
LIG3P49916 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
LIG3P49916 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
LIG3P49916 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
LIG3P49916 AC133041.1-202ENST00000642053 222 ntBASIC20.62■□□□□ 0.89
LIG3P49916 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
LIG3P49916 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
LIG3P49916 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
LIG3P49916 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
LIG3P49916 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
LIG3P49916 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIG3P49916 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIG3P49916 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.61■□□□□ 0.89
LIG3P49916 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
LIG3P49916 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
LIG3P49916 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIG3P49916 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIG3P49916 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
LIG3P49916 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
LIG3P49916 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
LIG3P49916 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
LIG3P49916 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.61■□□□□ 0.89
LIG3P49916 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.61■□□□□ 0.89
LIG3P49916 AL355472.2-201ENST00000422958 438 ntBASIC20.61■□□□□ 0.89
LIG3P49916 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.61■□□□□ 0.89
LIG3P49916 AC073210.2-201ENST00000430369 194 ntBASIC20.61■□□□□ 0.89
LIG3P49916 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.61■□□□□ 0.89
LIG3P49916 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
LIG3P49916 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.61■□□□□ 0.89
LIG3P49916 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.61■□□□□ 0.89
LIG3P49916 AC100791.3-201ENST00000617619 330 ntBASIC20.61■□□□□ 0.89
LIG3P49916 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
LIG3P49916 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
LIG3P49916 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIG3P49916 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
LIG3P49916 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LIG3P49916 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.61■□□□□ 0.89
LIG3P49916 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.61■□□□□ 0.89
LIG3P49916 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
LIG3P49916 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LIG3P49916 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
LIG3P49916 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIG3P49916 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIG3P49916 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.6■□□□□ 0.89
LIG3P49916 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
LIG3P49916 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.6■□□□□ 0.89
LIG3P49916 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIG3P49916 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.6■□□□□ 0.89
LIG3P49916 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.6■□□□□ 0.89
LIG3P49916 AC092118.2-201ENST00000613495 667 ntBASIC20.6■□□□□ 0.89
LIG3P49916 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LIG3P49916 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.6■□□□□ 0.89
LIG3P49916 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.6■□□□□ 0.89
LIG3P49916 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIG3P49916 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIG3P49916 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
LIG3P49916 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.59■□□□□ 0.89
LIG3P49916 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIG3P49916 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIG3P49916 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIG3P49916 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIG3P49916 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
LIG3P49916 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LIG3P49916 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.59■□□□□ 0.89
LIG3P49916 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.59■□□□□ 0.89
LIG3P49916 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
LIG3P49916 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
LIG3P49916 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
LIG3P49916 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIG3P49916 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LIG3P49916 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIG3P49916 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LIG3P49916 AL158211.5-201ENST00000623583 2518 ntBASIC20.58■□□□□ 0.89
LIG3P49916 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LIG3P49916 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIG3P49916 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIG3P49916 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
LIG3P49916 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIG3P49916 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIG3P49916 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIG3P49916 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
LIG3P49916 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
LIG3P49916 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.58■□□□□ 0.89
LIG3P49916 CYP2T3P-201ENST00000601990 817 ntBASIC20.58■□□□□ 0.89
LIG3P49916 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
LIG3P49916 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LIG3P49916 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LIG3P49916 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
LIG3P49916 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.58■□□□□ 0.88
LIG3P49916 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.58■□□□□ 0.88
LIG3P49916 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LIG3P49916 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.58■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms