Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC17.33■□□□□ 0.36
SOX2P48431 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC17.33■□□□□ 0.36
SOX2P48431 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC17.33■□□□□ 0.36
SOX2P48431 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC17.33■□□□□ 0.36
SOX2P48431 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC17.33■□□□□ 0.36
SOX2P48431 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
SOX2P48431 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SOX2P48431 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.33■□□□□ 0.36
SOX2P48431 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SOX2P48431 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.33■□□□□ 0.36
SOX2P48431 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.33■□□□□ 0.36
SOX2P48431 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SOX2P48431 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SOX2P48431 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SOX2P48431 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
SOX2P48431 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC17.32■□□□□ 0.36
SOX2P48431 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SOX2P48431 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX2P48431 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX2P48431 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
SOX2P48431 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX2P48431 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX2P48431 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX2P48431 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.32■□□□□ 0.36
SOX2P48431 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX2P48431 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SOX2P48431 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.32■□□□□ 0.36
SOX2P48431 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX2P48431 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX2P48431 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SOX2P48431 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX2P48431 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SOX2P48431 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SOX2P48431 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
SOX2P48431 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC17.32■□□□□ 0.36
SOX2P48431 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SOX2P48431 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC17.32■□□□□ 0.36
SOX2P48431 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SOX2P48431 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
SOX2P48431 KRT18P61-201ENST00000585825 1298 ntBASIC17.32■□□□□ 0.36
SOX2P48431 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC17.32■□□□□ 0.36
SOX2P48431 AL591742.1-201ENST00000604433 565 ntBASIC17.32■□□□□ 0.36
SOX2P48431 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC17.32■□□□□ 0.36
SOX2P48431 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX2P48431 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX2P48431 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX2P48431 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.32■□□□□ 0.36
SOX2P48431 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX2P48431 PTBP1P-201ENST00000554374 1601 ntBASIC17.32■□□□□ 0.36
SOX2P48431 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
SOX2P48431 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
SOX2P48431 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.31■□□□□ 0.36
SOX2P48431 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
SOX2P48431 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC17.31■□□□□ 0.36
SOX2P48431 KRT8P17-201ENST00000453110 1448 ntBASIC17.31■□□□□ 0.36
SOX2P48431 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX2P48431 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SOX2P48431 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX2P48431 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX2P48431 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX2P48431 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
SOX2P48431 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SOX2P48431 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC17.31■□□□□ 0.36
SOX2P48431 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX2P48431 BMP1-204ENST00000397814 836 ntTSL 4 BASIC17.31■□□□□ 0.36
SOX2P48431 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC17.31■□□□□ 0.36
SOX2P48431 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC17.31■□□□□ 0.36
SOX2P48431 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SOX2P48431 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC17.31■□□□□ 0.36
SOX2P48431 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX2P48431 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.31■□□□□ 0.36
SOX2P48431 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.31■□□□□ 0.36
SOX2P48431 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
SOX2P48431 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SOX2P48431 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SOX2P48431 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC17.31■□□□□ 0.36
SOX2P48431 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SOX2P48431 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
SOX2P48431 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.31■□□□□ 0.36
SOX2P48431 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
SOX2P48431 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
SOX2P48431 AL032819.2-201ENST00000624543 2162 ntBASIC17.3■□□□□ 0.36
SOX2P48431 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
SOX2P48431 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC17.3■□□□□ 0.36
SOX2P48431 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SOX2P48431 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SOX2P48431 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
SOX2P48431 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC17.3■□□□□ 0.36
SOX2P48431 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SOX2P48431 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC17.3■□□□□ 0.36
SOX2P48431 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC17.3■□□□□ 0.36
SOX2P48431 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SOX2P48431 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC17.3■□□□□ 0.36
SOX2P48431 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SOX2P48431 TFG-210ENST00000620299 1289 ntTSL 5 BASIC17.3■□□□□ 0.36
SOX2P48431 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SOX2P48431 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
SOX2P48431 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
SOX2P48431 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC17.3■□□□□ 0.36
SOX2P48431 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms