Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
RFX3P48380 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
RFX3P48380 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
RFX3P48380 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFX3P48380 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFX3P48380 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.49■□□□□ 0.55
RFX3P48380 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.49■□□□□ 0.55
RFX3P48380 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFX3P48380 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC18.49■□□□□ 0.55
RFX3P48380 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFX3P48380 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFX3P48380 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
RFX3P48380 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFX3P48380 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.49■□□□□ 0.55
RFX3P48380 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
RFX3P48380 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.49■□□□□ 0.55
RFX3P48380 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFX3P48380 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
RFX3P48380 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.49■□□□□ 0.55
RFX3P48380 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFX3P48380 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFX3P48380 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFX3P48380 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFX3P48380 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.49■□□□□ 0.55
RFX3P48380 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.49■□□□□ 0.55
RFX3P48380 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFX3P48380 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.49■□□□□ 0.55
RFX3P48380 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFX3P48380 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFX3P48380 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
RFX3P48380 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFX3P48380 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFX3P48380 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.48■□□□□ 0.55
RFX3P48380 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFX3P48380 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.48■□□□□ 0.55
RFX3P48380 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.48■□□□□ 0.55
RFX3P48380 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFX3P48380 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
RFX3P48380 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.48■□□□□ 0.55
RFX3P48380 AC069152.1-201ENST00000438030 544 ntBASIC18.48■□□□□ 0.55
RFX3P48380 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.48■□□□□ 0.55
RFX3P48380 AC133041.1-202ENST00000642053 222 ntBASIC18.48■□□□□ 0.55
RFX3P48380 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFX3P48380 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
RFX3P48380 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RFX3P48380 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFX3P48380 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RFX3P48380 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RFX3P48380 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFX3P48380 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
RFX3P48380 KRT16P6-202ENST00000425692 1426 ntBASIC18.48■□□□□ 0.55
RFX3P48380 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
RFX3P48380 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.47■□□□□ 0.55
RFX3P48380 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.47■□□□□ 0.55
RFX3P48380 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 AL390719.1-204ENST00000412397 1219 ntBASIC18.47■□□□□ 0.55
RFX3P48380 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.47■□□□□ 0.55
RFX3P48380 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC18.47■□□□□ 0.55
RFX3P48380 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.47■□□□□ 0.55
RFX3P48380 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.47■□□□□ 0.55
RFX3P48380 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
RFX3P48380 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.47■□□□□ 0.55
RFX3P48380 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.47■□□□□ 0.55
RFX3P48380 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.47■□□□□ 0.55
RFX3P48380 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
RFX3P48380 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
RFX3P48380 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
RFX3P48380 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFX3P48380 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
RFX3P48380 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFX3P48380 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
RFX3P48380 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFX3P48380 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.46■□□□□ 0.55
RFX3P48380 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
RFX3P48380 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFX3P48380 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.46■□□□□ 0.55
RFX3P48380 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFX3P48380 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
RFX3P48380 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
RFX3P48380 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms