Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CD99P1-205ENST00000527459 561 ntBASIC20.53■□□□□ 0.88
PTPN9P43378 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.53■□□□□ 0.88
PTPN9P43378 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.53■□□□□ 0.88
PTPN9P43378 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PTPN9P43378 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.53■□□□□ 0.88
PTPN9P43378 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.53■□□□□ 0.88
PTPN9P43378 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTPN9P43378 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTPN9P43378 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.53■□□□□ 0.88
PTPN9P43378 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.53■□□□□ 0.88
PTPN9P43378 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTPN9P43378 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTPN9P43378 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PTPN9P43378 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.53■□□□□ 0.88
PTPN9P43378 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PTPN9P43378 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PTPN9P43378 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
PTPN9P43378 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.53■□□□□ 0.88
PTPN9P43378 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.52■□□□□ 0.88
PTPN9P43378 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
PTPN9P43378 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PTPN9P43378 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.52■□□□□ 0.88
PTPN9P43378 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.52■□□□□ 0.88
PTPN9P43378 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.52■□□□□ 0.88
PTPN9P43378 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.52■□□□□ 0.88
PTPN9P43378 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PTPN9P43378 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.52■□□□□ 0.88
PTPN9P43378 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.52■□□□□ 0.88
PTPN9P43378 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.52■□□□□ 0.88
PTPN9P43378 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
PTPN9P43378 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PTPN9P43378 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
PTPN9P43378 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.52■□□□□ 0.87
PTPN9P43378 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
PTPN9P43378 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
PTPN9P43378 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
PTPN9P43378 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTPN9P43378 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
PTPN9P43378 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
PTPN9P43378 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.51■□□□□ 0.87
PTPN9P43378 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTPN9P43378 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTPN9P43378 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTPN9P43378 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.51■□□□□ 0.87
PTPN9P43378 ESRRAP1-201ENST00000400596 1257 ntBASIC20.51■□□□□ 0.87
PTPN9P43378 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC20.51■□□□□ 0.87
PTPN9P43378 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.51■□□□□ 0.87
PTPN9P43378 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.51■□□□□ 0.87
PTPN9P43378 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PTPN9P43378 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
PTPN9P43378 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.51■□□□□ 0.87
PTPN9P43378 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.51■□□□□ 0.87
PTPN9P43378 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.5■□□□□ 0.87
PTPN9P43378 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN9P43378 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.5■□□□□ 0.87
PTPN9P43378 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.5■□□□□ 0.87
PTPN9P43378 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN9P43378 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.5■□□□□ 0.87
PTPN9P43378 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN9P43378 AL158211.5-201ENST00000623583 2518 ntBASIC20.5■□□□□ 0.87
PTPN9P43378 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN9P43378 AP006587.1-201ENST00000534129 1502 ntBASIC20.5■□□□□ 0.87
PTPN9P43378 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN9P43378 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
PTPN9P43378 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN9P43378 KRT17P3-201ENST00000420566 1262 ntBASIC20.5■□□□□ 0.87
PTPN9P43378 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.5■□□□□ 0.87
PTPN9P43378 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.5■□□□□ 0.87
PTPN9P43378 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.5■□□□□ 0.87
PTPN9P43378 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.5■□□□□ 0.87
PTPN9P43378 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.5■□□□□ 0.87
PTPN9P43378 AC069544.1-201ENST00000609399 999 ntBASIC20.5■□□□□ 0.87
PTPN9P43378 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN9P43378 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
PTPN9P43378 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN9P43378 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN9P43378 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.5■□□□□ 0.87
PTPN9P43378 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.5■□□□□ 0.87
PTPN9P43378 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
PTPN9P43378 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN9P43378 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PTPN9P43378 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.49■□□□□ 0.87
PTPN9P43378 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTPN9P43378 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
PTPN9P43378 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTPN9P43378 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTPN9P43378 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTPN9P43378 YBX1P10-201ENST00000444752 975 ntBASIC20.49■□□□□ 0.87
PTPN9P43378 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.49■□□□□ 0.87
PTPN9P43378 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.49■□□□□ 0.87
PTPN9P43378 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTPN9P43378 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PTPN9P43378 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTPN9P43378 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PTPN9P43378 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PTPN9P43378 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PTPN9P43378 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC20.49■□□□□ 0.87
PTPN9P43378 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
PTPN9P43378 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.48■□□□□ 0.87
PTPN9P43378 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms