Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A3P12111 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC20.73■□□□□ 0.91
COL6A3P12111 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A3P12111 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
COL6A3P12111 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC20.73■□□□□ 0.91
COL6A3P12111 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A3P12111 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A3P12111 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.73■□□□□ 0.91
COL6A3P12111 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A3P12111 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A3P12111 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
COL6A3P12111 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A3P12111 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
COL6A3P12111 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.73■□□□□ 0.91
COL6A3P12111 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A3P12111 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A3P12111 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC20.72■□□□□ 0.91
COL6A3P12111 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC20.72■□□□□ 0.91
COL6A3P12111 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC20.72■□□□□ 0.91
COL6A3P12111 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A3P12111 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.72■□□□□ 0.91
COL6A3P12111 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A3P12111 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.72■□□□□ 0.91
COL6A3P12111 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A3P12111 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC20.72■□□□□ 0.91
COL6A3P12111 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A3P12111 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC20.72■□□□□ 0.91
COL6A3P12111 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC20.72■□□□□ 0.91
COL6A3P12111 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A3P12111 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A3P12111 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A3P12111 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A3P12111 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A3P12111 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.71■□□□□ 0.91
COL6A3P12111 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A3P12111 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC20.71■□□□□ 0.91
COL6A3P12111 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
COL6A3P12111 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A3P12111 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.71■□□□□ 0.91
COL6A3P12111 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A3P12111 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A3P12111 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC20.71■□□□□ 0.91
COL6A3P12111 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
COL6A3P12111 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A3P12111 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A3P12111 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.71■□□□□ 0.91
COL6A3P12111 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A3P12111 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.71■□□□□ 0.91
COL6A3P12111 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC20.71■□□□□ 0.91
COL6A3P12111 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A3P12111 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A3P12111 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC20.71■□□□□ 0.91
COL6A3P12111 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC20.71■□□□□ 0.91
COL6A3P12111 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
COL6A3P12111 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.91
COL6A3P12111 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL6A3P12111 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC20.7■□□□□ 0.9
COL6A3P12111 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL6A3P12111 AC011498.5-201ENST00000592027 486 ntBASIC20.7■□□□□ 0.9
COL6A3P12111 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.7■□□□□ 0.9
COL6A3P12111 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.7■□□□□ 0.9
COL6A3P12111 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC20.7■□□□□ 0.9
COL6A3P12111 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL6A3P12111 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL6A3P12111 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.7■□□□□ 0.9
COL6A3P12111 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
COL6A3P12111 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC20.7■□□□□ 0.9
COL6A3P12111 URGCP-206ENST00000446958 365 ntTSL 2 BASIC20.7■□□□□ 0.9
COL6A3P12111 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC20.7■□□□□ 0.9
COL6A3P12111 AC012615.1-201ENST00000565797 1299 ntBASIC20.7■□□□□ 0.9
COL6A3P12111 AL390719.2-201ENST00000606993 987 ntBASIC20.7■□□□□ 0.9
COL6A3P12111 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL6A3P12111 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL6A3P12111 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A3P12111 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A3P12111 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC20.69■□□□□ 0.9
COL6A3P12111 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.69■□□□□ 0.9
COL6A3P12111 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
COL6A3P12111 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC20.69■□□□□ 0.9
COL6A3P12111 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC20.69■□□□□ 0.9
COL6A3P12111 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.69■□□□□ 0.9
COL6A3P12111 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A3P12111 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A3P12111 HLA-G-202ENST00000376815 851 ntBASIC20.69■□□□□ 0.9
COL6A3P12111 HNRNPA1P28-201ENST00000424481 961 ntBASIC20.69■□□□□ 0.9
COL6A3P12111 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC20.69■□□□□ 0.9
COL6A3P12111 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC20.69■□□□□ 0.9
COL6A3P12111 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A3P12111 NEK4P2-201ENST00000580004 1012 ntBASIC20.69■□□□□ 0.9
COL6A3P12111 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
COL6A3P12111 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.69■□□□□ 0.9
COL6A3P12111 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A3P12111 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A3P12111 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A3P12111 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
COL6A3P12111 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A3P12111 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC20.69■□□□□ 0.9
COL6A3P12111 FABP5-202ENST00000396359 986 ntTSL 5 BASIC20.69■□□□□ 0.9
COL6A3P12111 AC243591.1-201ENST00000452967 1364 ntBASIC20.69■□□□□ 0.9
COL6A3P12111 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms