Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.2■□□□□ 0.98
RNF40O75150 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC21.2■□□□□ 0.98
RNF40O75150 CDV3P1-201ENST00000471403 739 ntBASIC21.2■□□□□ 0.98
RNF40O75150 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.2■□□□□ 0.98
RNF40O75150 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.2■□□□□ 0.98
RNF40O75150 CYP2T3P-201ENST00000601990 817 ntBASIC21.2■□□□□ 0.98
RNF40O75150 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
RNF40O75150 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.2■□□□□ 0.98
RNF40O75150 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF40O75150 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RNF40O75150 FP700111.2-201ENST00000619190 1892 ntBASIC21.2■□□□□ 0.98
RNF40O75150 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC21.19■□□□□ 0.98
RNF40O75150 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF40O75150 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
RNF40O75150 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF40O75150 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
RNF40O75150 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF40O75150 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC21.19■□□□□ 0.98
RNF40O75150 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF40O75150 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC21.19■□□□□ 0.98
RNF40O75150 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF40O75150 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF40O75150 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF40O75150 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC21.19■□□□□ 0.98
RNF40O75150 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.19■□□□□ 0.98
RNF40O75150 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.19■□□□□ 0.98
RNF40O75150 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.19■□□□□ 0.98
RNF40O75150 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
RNF40O75150 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.19■□□□□ 0.98
RNF40O75150 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
RNF40O75150 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
RNF40O75150 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF40O75150 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.18■□□□□ 0.98
RNF40O75150 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
RNF40O75150 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.18■□□□□ 0.98
RNF40O75150 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF40O75150 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RNF40O75150 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC21.18■□□□□ 0.98
RNF40O75150 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF40O75150 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF40O75150 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC21.18■□□□□ 0.98
RNF40O75150 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF40O75150 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RNF40O75150 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC21.18■□□□□ 0.98
RNF40O75150 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RNF40O75150 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.18■□□□□ 0.98
RNF40O75150 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RNF40O75150 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF40O75150 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
RNF40O75150 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF40O75150 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC21.18■□□□□ 0.98
RNF40O75150 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF40O75150 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
RNF40O75150 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF40O75150 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
RNF40O75150 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC21.18■□□□□ 0.98
RNF40O75150 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
RNF40O75150 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
RNF40O75150 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RNF40O75150 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RNF40O75150 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
RNF40O75150 AC060766.5-201ENST00000590539 871 ntBASIC21.17■□□□□ 0.98
RNF40O75150 AC100791.3-201ENST00000617619 330 ntBASIC21.17■□□□□ 0.98
RNF40O75150 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
RNF40O75150 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RNF40O75150 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
RNF40O75150 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RNF40O75150 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.17■□□□□ 0.98
RNF40O75150 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RNF40O75150 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
RNF40O75150 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RNF40O75150 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RNF40O75150 NEFHP1-201ENST00000412845 2629 ntBASIC21.16■□□□□ 0.98
RNF40O75150 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RNF40O75150 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RNF40O75150 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RNF40O75150 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.16■□□□□ 0.98
RNF40O75150 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
RNF40O75150 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RNF40O75150 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21.16■□□□□ 0.98
RNF40O75150 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC21.16■□□□□ 0.98
RNF40O75150 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RNF40O75150 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
RNF40O75150 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RNF40O75150 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
RNF40O75150 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
RNF40O75150 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
RNF40O75150 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.16■□□□□ 0.98
RNF40O75150 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
RNF40O75150 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
RNF40O75150 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RNF40O75150 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RNF40O75150 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RNF40O75150 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
RNF40O75150 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RNF40O75150 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
RNF40O75150 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RNF40O75150 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RNF40O75150 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RNF40O75150 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms