Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC110285.5-201ENST00000611501 352 ntBASIC20.18■□□□□ 0.82
CBX4O00257 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CBX4O00257 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
CBX4O00257 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.18■□□□□ 0.82
CBX4O00257 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CBX4O00257 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
CBX4O00257 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CBX4O00257 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.18■□□□□ 0.82
CBX4O00257 NBPF21P-201ENST00000425093 1451 ntBASIC20.18■□□□□ 0.82
CBX4O00257 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CBX4O00257 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
CBX4O00257 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.17■□□□□ 0.82
CBX4O00257 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CBX4O00257 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CBX4O00257 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CBX4O00257 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
CBX4O00257 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CBX4O00257 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
CBX4O00257 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CBX4O00257 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
CBX4O00257 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.17■□□□□ 0.82
CBX4O00257 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.17■□□□□ 0.82
CBX4O00257 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
CBX4O00257 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CBX4O00257 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.17■□□□□ 0.82
CBX4O00257 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.17■□□□□ 0.82
CBX4O00257 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
CBX4O00257 TFP1-202ENST00000475455 1573 ntBASIC20.17■□□□□ 0.82
CBX4O00257 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
CBX4O00257 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CBX4O00257 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
CBX4O00257 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CBX4O00257 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CBX4O00257 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.16■□□□□ 0.82
CBX4O00257 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CBX4O00257 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.16■□□□□ 0.82
CBX4O00257 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CBX4O00257 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CBX4O00257 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.16■□□□□ 0.82
CBX4O00257 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CBX4O00257 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CBX4O00257 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CBX4O00257 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.16■□□□□ 0.82
CBX4O00257 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.16■□□□□ 0.82
CBX4O00257 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CBX4O00257 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.16■□□□□ 0.82
CBX4O00257 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.16■□□□□ 0.82
CBX4O00257 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
CBX4O00257 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.16■□□□□ 0.82
CBX4O00257 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.16■□□□□ 0.82
CBX4O00257 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.16■□□□□ 0.82
CBX4O00257 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CBX4O00257 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.16■□□□□ 0.82
CBX4O00257 AP006587.1-201ENST00000534129 1502 ntBASIC20.16■□□□□ 0.82
CBX4O00257 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CBX4O00257 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.15■□□□□ 0.82
CBX4O00257 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
CBX4O00257 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.15■□□□□ 0.82
CBX4O00257 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.15■□□□□ 0.82
CBX4O00257 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.15■□□□□ 0.82
CBX4O00257 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CBX4O00257 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CBX4O00257 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.15■□□□□ 0.82
CBX4O00257 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.15■□□□□ 0.82
CBX4O00257 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.15■□□□□ 0.82
CBX4O00257 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CBX4O00257 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CBX4O00257 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CBX4O00257 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
CBX4O00257 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.14■□□□□ 0.81
CBX4O00257 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CBX4O00257 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
CBX4O00257 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CBX4O00257 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
CBX4O00257 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.14■□□□□ 0.81
CBX4O00257 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CBX4O00257 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
CBX4O00257 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.14■□□□□ 0.81
CBX4O00257 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.14■□□□□ 0.81
CBX4O00257 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.14■□□□□ 0.81
CBX4O00257 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CBX4O00257 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CBX4O00257 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.14■□□□□ 0.81
CBX4O00257 Z99916.2-201ENST00000604037 246 ntBASIC20.14■□□□□ 0.81
CBX4O00257 PCDHAC2-203ENST00000615316 3011 ntBASIC20.14■□□□□ 0.81
CBX4O00257 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CBX4O00257 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CBX4O00257 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
CBX4O00257 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
CBX4O00257 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CBX4O00257 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
CBX4O00257 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CBX4O00257 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CBX4O00257 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CBX4O00257 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.13■□□□□ 0.81
CBX4O00257 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CBX4O00257 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CBX4O00257 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.13■□□□□ 0.81
CBX4O00257 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.13■□□□□ 0.81
CBX4O00257 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms