Protein–RNA interactions for Protein: A6NKF7

TMEM88B, Transmembrane protein 88B, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM88BA6NKF7 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
TMEM88BA6NKF7 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
TMEM88BA6NKF7 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC23.07■■□□□ 1.28
TMEM88BA6NKF7 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
TMEM88BA6NKF7 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
TMEM88BA6NKF7 NUS1P1-201ENST00000446295 882 ntBASIC23.07■■□□□ 1.28
TMEM88BA6NKF7 TSSC2-201ENST00000450217 709 ntBASIC23.07■■□□□ 1.28
TMEM88BA6NKF7 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC23.07■■□□□ 1.28
TMEM88BA6NKF7 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
TMEM88BA6NKF7 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
TMEM88BA6NKF7 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
TMEM88BA6NKF7 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
TMEM88BA6NKF7 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
TMEM88BA6NKF7 KRT8P17-201ENST00000453110 1448 ntBASIC23.07■■□□□ 1.28
TMEM88BA6NKF7 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
TMEM88BA6NKF7 AC116351.2-201ENST00000606540 1585 ntBASIC23.06■■□□□ 1.28
TMEM88BA6NKF7 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
TMEM88BA6NKF7 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
TMEM88BA6NKF7 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TMEM88BA6NKF7 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
TMEM88BA6NKF7 DERL1-203ENST00000419562 918 ntTSL 2 BASIC23.06■■□□□ 1.28
TMEM88BA6NKF7 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC23.06■■□□□ 1.28
TMEM88BA6NKF7 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
TMEM88BA6NKF7 GCSHP2-201ENST00000560971 527 ntBASIC23.06■■□□□ 1.28
TMEM88BA6NKF7 MIR3180-1-201ENST00000580374 94 ntBASIC23.06■■□□□ 1.28
TMEM88BA6NKF7 MIR3180-3-201ENST00000584616 94 ntBASIC23.06■■□□□ 1.28
TMEM88BA6NKF7 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TMEM88BA6NKF7 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TMEM88BA6NKF7 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
TMEM88BA6NKF7 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
TMEM88BA6NKF7 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
TMEM88BA6NKF7 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC23.06■■□□□ 1.28
TMEM88BA6NKF7 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
TMEM88BA6NKF7 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
TMEM88BA6NKF7 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC23.05■■□□□ 1.28
TMEM88BA6NKF7 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
TMEM88BA6NKF7 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC23.05■■□□□ 1.28
TMEM88BA6NKF7 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC23.05■■□□□ 1.28
TMEM88BA6NKF7 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC23.05■■□□□ 1.28
TMEM88BA6NKF7 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
TMEM88BA6NKF7 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
TMEM88BA6NKF7 AC117500.6-201ENST00000624871 588 ntBASIC23.05■■□□□ 1.28
TMEM88BA6NKF7 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
TMEM88BA6NKF7 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
TMEM88BA6NKF7 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
TMEM88BA6NKF7 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC23.04■■□□□ 1.28
TMEM88BA6NKF7 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
TMEM88BA6NKF7 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC23.04■■□□□ 1.28
TMEM88BA6NKF7 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
TMEM88BA6NKF7 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
TMEM88BA6NKF7 AL645929.1-201ENST00000420084 975 ntBASIC23.04■■□□□ 1.28
TMEM88BA6NKF7 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC23.04■■□□□ 1.28
TMEM88BA6NKF7 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC23.04■■□□□ 1.28
TMEM88BA6NKF7 NEK4P2-201ENST00000580004 1012 ntBASIC23.04■■□□□ 1.28
TMEM88BA6NKF7 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC23.04■■□□□ 1.28
TMEM88BA6NKF7 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
TMEM88BA6NKF7 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC23.04■■□□□ 1.28
TMEM88BA6NKF7 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
TMEM88BA6NKF7 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
TMEM88BA6NKF7 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC23.04■■□□□ 1.28
TMEM88BA6NKF7 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
TMEM88BA6NKF7 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC23.04■■□□□ 1.28
TMEM88BA6NKF7 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC23.04■■□□□ 1.28
TMEM88BA6NKF7 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
TMEM88BA6NKF7 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
TMEM88BA6NKF7 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TMEM88BA6NKF7 GOLGA6L3-201ENST00000507199 1679 ntBASIC23.03■■□□□ 1.28
TMEM88BA6NKF7 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
TMEM88BA6NKF7 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC23.03■■□□□ 1.28
TMEM88BA6NKF7 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC23.03■■□□□ 1.28
TMEM88BA6NKF7 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TMEM88BA6NKF7 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TMEM88BA6NKF7 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TMEM88BA6NKF7 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TMEM88BA6NKF7 SPDYE15P-201ENST00000424157 909 ntBASIC23.03■■□□□ 1.28
TMEM88BA6NKF7 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC23.03■■□□□ 1.28
TMEM88BA6NKF7 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC23.03■■□□□ 1.28
TMEM88BA6NKF7 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TMEM88BA6NKF7 PALM-207ENST00000590161 2137 ntTSL 4 BASIC23.03■■□□□ 1.28
TMEM88BA6NKF7 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TMEM88BA6NKF7 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC23.03■■□□□ 1.28
TMEM88BA6NKF7 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC23.03■■□□□ 1.28
TMEM88BA6NKF7 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
TMEM88BA6NKF7 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC23.02■■□□□ 1.28
TMEM88BA6NKF7 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
TMEM88BA6NKF7 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC23.02■■□□□ 1.28
TMEM88BA6NKF7 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC23.02■■□□□ 1.28
TMEM88BA6NKF7 Z85996.1-201ENST00000494644 937 ntBASIC23.02■■□□□ 1.28
TMEM88BA6NKF7 AC079776.4-201ENST00000511039 504 ntBASIC23.02■■□□□ 1.28
TMEM88BA6NKF7 NT5C-210ENST00000582160 860 ntTSL 2 BASIC23.02■■□□□ 1.28
TMEM88BA6NKF7 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
TMEM88BA6NKF7 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC23.02■■□□□ 1.28
TMEM88BA6NKF7 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
TMEM88BA6NKF7 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
TMEM88BA6NKF7 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
TMEM88BA6NKF7 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
TMEM88BA6NKF7 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
TMEM88BA6NKF7 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
TMEM88BA6NKF7 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC23.01■■□□□ 1.27
TMEM88BA6NKF7 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms