Protein–RNA interactions for Protein: A6NIU2

LINC01549, Putative uncharacterized protein encoded by LINC01549, humanhuman

Predictions only

Length 74 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01549A6NIU2 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC01549A6NIU2 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
LINC01549A6NIU2 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC01549A6NIU2 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
LINC01549A6NIU2 LHPP-203ENST00000392757 840 ntTSL 3 BASIC14.01□□□□□ -0.17
LINC01549A6NIU2 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC01549A6NIU2 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
LINC01549A6NIU2 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LINC01549A6NIU2 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC01549A6NIU2 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC14.01□□□□□ -0.17
LINC01549A6NIU2 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LINC01549A6NIU2 MOK-225ENST00000522867 1883 ntTSL 5 BASIC14.01□□□□□ -0.17
LINC01549A6NIU2 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC14.01□□□□□ -0.17
LINC01549A6NIU2 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC01549A6NIU2 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC14.01□□□□□ -0.17
LINC01549A6NIU2 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
LINC01549A6NIU2 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
LINC01549A6NIU2 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC14.01□□□□□ -0.17
LINC01549A6NIU2 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01549A6NIU2 AP001271.2-201ENST00000624018 1556 ntBASIC14□□□□□ -0.17
LINC01549A6NIU2 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01549A6NIU2 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC14□□□□□ -0.17
LINC01549A6NIU2 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
LINC01549A6NIU2 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC14□□□□□ -0.17
LINC01549A6NIU2 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01549A6NIU2 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01549A6NIU2 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC14□□□□□ -0.17
LINC01549A6NIU2 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01549A6NIU2 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01549A6NIU2 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC14□□□□□ -0.17
LINC01549A6NIU2 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC14□□□□□ -0.17
LINC01549A6NIU2 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC14□□□□□ -0.17
LINC01549A6NIU2 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC14□□□□□ -0.17
LINC01549A6NIU2 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC14□□□□□ -0.17
LINC01549A6NIU2 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC14□□□□□ -0.17
LINC01549A6NIU2 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01549A6NIU2 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01549A6NIU2 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01549A6NIU2 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01549A6NIU2 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01549A6NIU2 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01549A6NIU2 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01549A6NIU2 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01549A6NIU2 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
LINC01549A6NIU2 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC14□□□□□ -0.17
LINC01549A6NIU2 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01549A6NIU2 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01549A6NIU2 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
LINC01549A6NIU2 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC14□□□□□ -0.17
LINC01549A6NIU2 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC14□□□□□ -0.17
LINC01549A6NIU2 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 IGHV3-19-201ENST00000521488 291 ntBASIC13.99□□□□□ -0.17
LINC01549A6NIU2 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LINC01549A6NIU2 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LINC01549A6NIU2 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LINC01549A6NIU2 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
LINC01549A6NIU2 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC13.98□□□□□ -0.17
LINC01549A6NIU2 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LINC01549A6NIU2 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LINC01549A6NIU2 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms