Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 UBFD1P1-201ENST00000473259 814 ntBASIC5.95□□□□□ -1.46
LHX3Q9UBR4 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 TRBV5-2-201ENST00000489095 273 ntBASIC5.95□□□□□ -1.46
LHX3Q9UBR4 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 MIR2117-201ENST00000516780 80 ntBASIC5.95□□□□□ -1.46
LHX3Q9UBR4 TRIM51DP-201ENST00000529746 596 ntBASIC5.95□□□□□ -1.46
LHX3Q9UBR4 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 LINC00615-201ENST00000546725 1406 ntTSL 2 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 ZNF322P1-201ENST00000568013 1209 ntBASIC5.95□□□□□ -1.46
LHX3Q9UBR4 AC139099.1-201ENST00000573737 976 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 YES1-203ENST00000577961 4554 ntTSL 5 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 COX6CP7-201ENST00000597056 208 ntBASIC5.95□□□□□ -1.46
LHX3Q9UBR4 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 AC079414.3-201ENST00000612986 1090 ntBASIC5.95□□□□□ -1.46
LHX3Q9UBR4 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 MVP-219ENST00000629059 120 ntTSL 5 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.95□□□□□ -1.46
LHX3Q9UBR4 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 MAPK10-366ENST00000641903 2812 ntAPPRIS ALT1 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 RPL23AP17-201ENST00000401064 499 ntBASIC5.94□□□□□ -1.46
LHX3Q9UBR4 MRPL53P1-201ENST00000414323 319 ntBASIC5.94□□□□□ -1.46
LHX3Q9UBR4 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 AC126120.1-201ENST00000431082 470 ntBASIC5.94□□□□□ -1.46
LHX3Q9UBR4 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 RPS29P14-201ENST00000431518 171 ntBASIC5.94□□□□□ -1.46
LHX3Q9UBR4 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 AP006222.1-205ENST00000450734 457 ntBASIC5.94□□□□□ -1.46
LHX3Q9UBR4 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 GAPDHP71-201ENST00000511530 1003 ntBASIC5.94□□□□□ -1.46
LHX3Q9UBR4 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 AP001804.1-201ENST00000526868 919 ntBASIC5.94□□□□□ -1.46
LHX3Q9UBR4 HMGN2P36-201ENST00000529541 409 ntBASIC5.94□□□□□ -1.46
LHX3Q9UBR4 VEPH1-219ENST00000537559 992 ntTSL 5 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 ATM-229ENST00000639953 587 ntTSL 5 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 OR8G3P-202ENST00000641572 1255 ntBASIC5.94□□□□□ -1.46
LHX3Q9UBR4 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 ROR1-AS1-202ENST00000424995 2189 ntTSL 2 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5.94□□□□□ -1.46
LHX3Q9UBR4 AL161756.3-201ENST00000641216 2071 ntBASIC5.94□□□□□ -1.46
LHX3Q9UBR4 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 AC005225.5-201ENST00000623547 2225 ntBASIC5.93□□□□□ -1.46
LHX3Q9UBR4 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
LHX3Q9UBR4 AC023490.2-201ENST00000359859 470 ntBASIC5.93□□□□□ -1.46
LHX3Q9UBR4 SNORD1C-201ENST00000363315 78 ntBASIC5.93□□□□□ -1.46
LHX3Q9UBR4 PPCS-201ENST00000372556 984 ntTSL 2 BASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms