Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 DNAH17-202ENST00000585328 13708 ntAPPRIS ALT2 TSL 5 BASIC7.98□□□□□ -1.13
TRAIPQ9BWF2 PPWD1-201ENST00000261308 2166 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
TRAIPQ9BWF2 GDPD4-202ENST00000376217 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC7.98□□□□□ -1.13
TRAIPQ9BWF2 NRXN1-206ENST00000402717 2508 ntTSL 5 BASIC7.98□□□□□ -1.13
TRAIPQ9BWF2 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
TRAIPQ9BWF2 MAPK10-242ENST00000639242 3088 ntAPPRIS P2 TSL 5 BASIC7.98□□□□□ -1.13
TRAIPQ9BWF2 CCNB3-204ENST00000376042 4693 ntAPPRIS P1 TSL 2 BASIC7.98□□□□□ -1.13
TRAIPQ9BWF2 CCDC129-205ENST00000451887 3611 ntAPPRIS ALT2 TSL 2 BASIC7.98□□□□□ -1.13
TRAIPQ9BWF2 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
TRAIPQ9BWF2 AC096582.3-201ENST00000636578 3716 ntAPPRIS P1 TSL 5 BASIC7.98□□□□□ -1.13
TRAIPQ9BWF2 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AC096656.1-201ENST00000623826 1364 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 OR2A42-202ENST00000641810 4946 ntAPPRIS P1 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 HSD17B4-212ENST00000509514 2314 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 ST8SIA5-203ENST00000538168 13761 ntTSL 2 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 NBPF15-206ENST00000581897 4272 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AL359396.1-201ENST00000623151 2376 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 UNC5D-201ENST00000287272 8662 ntTSL 5 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AC069222.1-201ENST00000608028 3360 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 OR1L8-202ENST00000641027 2024 ntAPPRIS P1 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 SEC61G-201ENST00000352861 462 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 Y_RNA.192-201ENST00000363977 102 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 SPRR2D-202ENST00000368756 788 ntAPPRIS P1 TSL 2 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 RNU6-575P-201ENST00000411326 105 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 MTND4P22-201ENST00000413116 1169 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AL365203.2-201ENST00000423444 196 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AC114752.2-201ENST00000424119 404 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AC134879.1-201ENST00000426062 394 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AL009174.1-201ENST00000426577 416 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 PHB2P1-201ENST00000434943 890 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 CBX1P4-201ENST00000439415 457 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AL356133.1-201ENST00000444762 372 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AL138930.1-201ENST00000446952 635 ntTSL 3 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AC079776.3-201ENST00000450665 370 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AC005517.1-201ENST00000452091 489 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 SRP68P2-201ENST00000456184 254 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AL391863.1-202ENST00000457427 612 ntTSL 5 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 LINC00888-204ENST00000487386 421 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 ZNF525-204ENST00000491101 569 ntTSL 4 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 RN7SL306P-201ENST00000492941 296 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 RPL10P7-201ENST00000495649 625 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 DYNLL1P6-201ENST00000503440 264 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 LINC01085-203ENST00000511195 326 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AC116353.3-201ENST00000511215 249 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AC022639.1-204ENST00000520365 569 ntTSL 4 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 PTTG3P-201ENST00000521862 606 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 LINC01559-203ENST00000531049 683 ntTSL 3 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AP002833.2-201ENST00000531585 462 ntTSL 3 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 OR7E161P-201ENST00000533722 967 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AC122688.2-201ENST00000543922 585 ntTSL 3 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 CLEC4E-206ENST00000545274 730 ntTSL 3 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 BMS1P15-201ENST00000554269 1141 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 CASC16-202ENST00000563844 610 ntTSL 3 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 EEF1B2P1-201ENST00000567221 672 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AC108097.1-201ENST00000568275 534 ntTSL 4 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 RN7SL426P-201ENST00000579106 295 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 OR7E19P-202ENST00000589942 844 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AL136985.2-201ENST00000607372 535 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AL121830.1-206ENST00000608476 1254 ntTSL 5 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 ALKAL2-208ENST00000619265 496 ntTSL 2 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AC078909.2-201ENST00000620584 398 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AC211433.3-201ENST00000623770 375 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AC022743.1-201ENST00000624990 664 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AC110079.2-202ENST00000629093 698 ntTSL 3 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 CLUHP10-201ENST00000631979 980 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AL590396.3-201ENST00000636334 300 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 OR7E161P-202ENST00000641994 1033 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AC005539.1-201ENST00000443768 1479 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 Z99496.1-201ENST00000469424 1477 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 CAST-234ENST00000511049 3273 ntAPPRIS ALT2 TSL 5 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 RNF217-AS1-201ENST00000439075 4507 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 ARHGAP24-202ENST00000395183 2740 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 AL121768.1-201ENST00000613917 2544 ntBASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 MMACHC-203ENST00000616135 1510 ntTSL 2 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 CLEC2D-203ENST00000290855 5279 ntAPPRIS P3 TSL 1 (best) BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 LINC00269-201ENST00000399711 2173 ntTSL 2 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 UTY-216ENST00000624098 3636 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 FAR2P1-201ENST00000325390 3679 ntTSL 5 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 CD86-209ENST00000493101 1572 ntTSL 2 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 FAM122C-201ENST00000370784 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
TRAIPQ9BWF2 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC7.96□□□□□ -1.13
TRAIPQ9BWF2 MBL2-201ENST00000373968 3569 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
TRAIPQ9BWF2 AL450426.1-201ENST00000635678 1602 ntTSL 5 BASIC7.96□□□□□ -1.13
TRAIPQ9BWF2 GABRA6-201ENST00000274545 2128 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
TRAIPQ9BWF2 AP003119.3-201ENST00000566747 4192 ntBASIC7.96□□□□□ -1.13
TRAIPQ9BWF2 APP-206ENST00000359726 3294 ntTSL 2 BASIC7.96□□□□□ -1.13
TRAIPQ9BWF2 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC7.96□□□□□ -1.13
TRAIPQ9BWF2 PHF11-201ENST00000357596 1471 ntAPPRIS ALT2 TSL 5 BASIC7.96□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms