Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL4A4P53420 RNU1-59P-201ENST00000364829 162 ntBASIC6.21□□□□□ -1.42
COL4A4P53420 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL4A4P53420 AL121977.1-201ENST00000401636 979 ntBASIC6.21□□□□□ -1.42
COL4A4P53420 RPL37P18-201ENST00000411602 243 ntBASIC6.21□□□□□ -1.42
COL4A4P53420 RPS4XP5-201ENST00000419038 768 ntBASIC6.21□□□□□ -1.42
COL4A4P53420 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC6.21□□□□□ -1.42
COL4A4P53420 HMGB1P32-201ENST00000425971 565 ntBASIC6.21□□□□□ -1.42
COL4A4P53420 AC073410.1-201ENST00000435125 589 ntBASIC6.21□□□□□ -1.42
COL4A4P53420 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC6.21□□□□□ -1.42
COL4A4P53420 RPL7P61-201ENST00000451721 751 ntBASIC6.21□□□□□ -1.42
COL4A4P53420 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC6.21□□□□□ -1.42
COL4A4P53420 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC6.21□□□□□ -1.42
COL4A4P53420 RN7SKP288-201ENST00000516227 268 ntBASIC6.21□□□□□ -1.42
COL4A4P53420 AC025366.1-201ENST00000523264 202 ntTSL 3 BASIC6.21□□□□□ -1.42
COL4A4P53420 SECISBP2L-209ENST00000559471 7176 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL4A4P53420 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC6.21□□□□□ -1.42
COL4A4P53420 AC106730.2-201ENST00000566641 540 ntBASIC6.21□□□□□ -1.42
COL4A4P53420 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC6.21□□□□□ -1.42
COL4A4P53420 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC6.21□□□□□ -1.42
COL4A4P53420 U1.25-201ENST00000614085 162 ntBASIC6.21□□□□□ -1.42
COL4A4P53420 U1.34-201ENST00000618578 162 ntBASIC6.21□□□□□ -1.42
COL4A4P53420 U1.31-201ENST00000620022 160 ntBASIC6.21□□□□□ -1.42
COL4A4P53420 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
COL4A4P53420 KCNA2-214ENST00000640774 6673 ntTSL 5 BASIC6.21□□□□□ -1.42
COL4A4P53420 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL4A4P53420 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL4A4P53420 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
COL4A4P53420 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC6.21□□□□□ -1.42
COL4A4P53420 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL4A4P53420 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL4A4P53420 AC087516.1-201ENST00000561236 2428 ntBASIC6.21□□□□□ -1.42
COL4A4P53420 AFP-201ENST00000226359 1914 ntTSL 5 BASIC6.21□□□□□ -1.42
COL4A4P53420 NRCAM-204ENST00000379028 6685 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
COL4A4P53420 PRLR-208ENST00000509140 1610 ntTSL 5 BASIC6.21□□□□□ -1.42
COL4A4P53420 SLC7A2-201ENST00000004531 7560 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL4A4P53420 RNF4-214ENST00000511600 4123 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
COL4A4P53420 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL4A4P53420 RNA5SP131-201ENST00000365452 119 ntBASIC6.2□□□□□ -1.42
COL4A4P53420 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
COL4A4P53420 RNU6ATAC18P-201ENST00000408413 101 ntBASIC6.2□□□□□ -1.42
COL4A4P53420 RBMY2KP-201ENST00000418221 992 ntBASIC6.2□□□□□ -1.42
COL4A4P53420 VDAC1P6-201ENST00000430062 855 ntBASIC6.2□□□□□ -1.42
COL4A4P53420 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC6.2□□□□□ -1.42
COL4A4P53420 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
COL4A4P53420 RAB28P2-201ENST00000454299 641 ntBASIC6.2□□□□□ -1.42
COL4A4P53420 RPS21P4-201ENST00000487122 248 ntBASIC6.2□□□□□ -1.42
COL4A4P53420 RPL15P21-201ENST00000495592 567 ntBASIC6.2□□□□□ -1.42
COL4A4P53420 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL4A4P53420 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL4A4P53420 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC6.2□□□□□ -1.42
COL4A4P53420 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
COL4A4P53420 MAPK6-201ENST00000261845 5345 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL4A4P53420 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL4A4P53420 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC6.2□□□□□ -1.42
COL4A4P53420 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL4A4P53420 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC6.2□□□□□ -1.42
COL4A4P53420 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
COL4A4P53420 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
COL4A4P53420 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL4A4P53420 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
COL4A4P53420 RPGRIP1L-205ENST00000563746 4193 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL4A4P53420 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
COL4A4P53420 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL4A4P53420 AC006206.1-201ENST00000544842 3387 ntBASIC6.2□□□□□ -1.42
COL4A4P53420 MIR223-201ENST00000385204 110 ntBASIC6.2□□□□□ -1.42
COL4A4P53420 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC6.2□□□□□ -1.42
COL4A4P53420 VDAC2P4-201ENST00000452925 711 ntBASIC6.2□□□□□ -1.42
COL4A4P53420 AL035090.1-201ENST00000454835 332 ntBASIC6.2□□□□□ -1.42
COL4A4P53420 RPL23AP40-201ENST00000487630 390 ntBASIC6.2□□□□□ -1.42
COL4A4P53420 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC6.2□□□□□ -1.42
COL4A4P53420 MVP-219ENST00000629059 120 ntTSL 5 BASIC6.2□□□□□ -1.42
COL4A4P53420 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL4A4P53420 VWA5A-205ENST00000456829 4388 ntAPPRIS P4 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL4A4P53420 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC6.19□□□□□ -1.42
COL4A4P53420 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL4A4P53420 IFIT2-201ENST00000371826 3489 ntAPPRIS P2 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL4A4P53420 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
COL4A4P53420 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL4A4P53420 NXF3-201ENST00000395065 1938 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL4A4P53420 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
COL4A4P53420 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL4A4P53420 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL4A4P53420 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC6.19□□□□□ -1.42
COL4A4P53420 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
COL4A4P53420 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL4A4P53420 AC023421.1-201ENST00000590535 1785 ntBASIC6.19□□□□□ -1.42
COL4A4P53420 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC6.19□□□□□ -1.42
COL4A4P53420 RNU1-77P-201ENST00000390868 162 ntBASIC6.19□□□□□ -1.42
COL4A4P53420 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL4A4P53420 AL590762.4-201ENST00000425885 253 ntBASIC6.19□□□□□ -1.42
COL4A4P53420 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC6.19□□□□□ -1.42
COL4A4P53420 OR52B5P-201ENST00000435337 951 ntBASIC6.19□□□□□ -1.42
COL4A4P53420 AC006335.2-201ENST00000437993 330 ntBASIC6.19□□□□□ -1.42
COL4A4P53420 AC019185.1-201ENST00000442718 389 ntBASIC6.19□□□□□ -1.42
COL4A4P53420 AL672167.3-201ENST00000465951 960 ntBASIC6.19□□□□□ -1.42
COL4A4P53420 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC6.19□□□□□ -1.42
COL4A4P53420 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC6.19□□□□□ -1.42
COL4A4P53420 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC6.19□□□□□ -1.42
COL4A4P53420 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms