Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SMG1P4-203ENST00000517529 1589 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
COL9A1P20849 ZNF143-204ENST00000396604 2696 ntAPPRIS ALT1 TSL 5 BASIC8.51□□□□□ -1.05
COL9A1P20849 NR3C1-205ENST00000415690 3789 ntTSL 1 (best) BASIC8.51□□□□□ -1.05
COL9A1P20849 ZSCAN26-202ENST00000421553 2835 ntAPPRIS ALT1 TSL 1 (best) BASIC8.51□□□□□ -1.05
COL9A1P20849 TTC6-203ENST00000476979 2253 ntTSL 2 BASIC8.51□□□□□ -1.05
COL9A1P20849 CALML3-AS1-202ENST00000543008 4531 ntTSL 5 BASIC8.51□□□□□ -1.05
COL9A1P20849 FAM193A-210ENST00000545951 3987 ntAPPRIS ALT2 TSL 5 BASIC8.51□□□□□ -1.05
COL9A1P20849 GJA5-202ENST00000579774 3181 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.05
COL9A1P20849 ZNF790-208ENST00000615484 2451 ntAPPRIS P1 TSL 5 BASIC8.51□□□□□ -1.05
COL9A1P20849 EIF4BP2-201ENST00000416702 1794 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 USP6-205ENST00000574788 8464 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
COL9A1P20849 OR6M2P-202ENST00000641780 2063 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 ZNF286A-221ENST00000593105 5222 ntTSL 3 BASIC8.5□□□□□ -1.05
COL9A1P20849 MRAS-210ENST00000614350 4377 ntTSL 2 BASIC8.5□□□□□ -1.05
COL9A1P20849 AL161725.1-201ENST00000591577 1351 ntTSL 5 BASIC8.5□□□□□ -1.05
COL9A1P20849 MT-CO1-201ENST00000361624 1542 ntAPPRIS P1 BASIC8.5□□□□□ -1.05
COL9A1P20849 MTCO1P12-201ENST00000414273 1543 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
COL9A1P20849 POU3F4-201ENST00000373200 3878 ntAPPRIS P1 BASIC8.5□□□□□ -1.05
COL9A1P20849 DIDO1-206ENST00000395340 7551 ntAPPRIS P3 TSL 1 (best) BASIC8.5□□□□□ -1.05
COL9A1P20849 AL022323.2-201ENST00000623239 3000 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 CTC1-201ENST00000315684 7021 ntAPPRIS P2 TSL 1 (best) BASIC8.5□□□□□ -1.05
COL9A1P20849 METTL15-204ENST00000407364 4242 ntAPPRIS P1 TSL 5 BASIC8.5□□□□□ -1.05
COL9A1P20849 HRG-201ENST00000232003 2015 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
COL9A1P20849 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC8.5□□□□□ -1.05
COL9A1P20849 MIR217-201ENST00000384817 110 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC8.5□□□□□ -1.05
COL9A1P20849 IGHV4-59-201ENST00000390629 495 ntAPPRIS P1 BASIC8.5□□□□□ -1.05
COL9A1P20849 RN7SKP251-201ENST00000410830 314 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC8.5□□□□□ -1.05
COL9A1P20849 SPA17P1-201ENST00000416656 452 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC8.5□□□□□ -1.05
COL9A1P20849 Z93242.1-201ENST00000427102 353 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 KLF7-IT1-201ENST00000428777 655 ntTSL 2 BASIC8.5□□□□□ -1.05
COL9A1P20849 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC8.5□□□□□ -1.05
COL9A1P20849 RBPJP7-201ENST00000442803 1447 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC8.5□□□□□ -1.05
COL9A1P20849 RBPJP5-201ENST00000449433 1447 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 AC144530.1-201ENST00000452862 555 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC8.5□□□□□ -1.05
COL9A1P20849 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC8.5□□□□□ -1.05
COL9A1P20849 PCBP1-AS1-243ENST00000458698 1893 ntTSL 3 BASIC8.5□□□□□ -1.05
COL9A1P20849 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC8.5□□□□□ -1.05
COL9A1P20849 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC8.5□□□□□ -1.05
COL9A1P20849 AC108516.2-201ENST00000508163 349 ntTSL 5 BASIC8.5□□□□□ -1.05
COL9A1P20849 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC8.5□□□□□ -1.05
COL9A1P20849 AC114786.2-201ENST00000510090 1426 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
COL9A1P20849 AC112206.3-201ENST00000514578 389 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 AC018437.2-201ENST00000517369 389 ntTSL 5 BASIC8.5□□□□□ -1.05
COL9A1P20849 AC107953.1-201ENST00000522216 297 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 AC104248.1-201ENST00000522244 481 ntTSL 3 BASIC8.5□□□□□ -1.05
COL9A1P20849 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC8.5□□□□□ -1.05
COL9A1P20849 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC8.5□□□□□ -1.05
COL9A1P20849 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC8.5□□□□□ -1.05
COL9A1P20849 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC8.5□□□□□ -1.05
COL9A1P20849 AC023050.3-201ENST00000541142 333 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 ARNTL2-207ENST00000542388 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC8.5□□□□□ -1.05
COL9A1P20849 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC8.5□□□□□ -1.05
COL9A1P20849 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC8.5□□□□□ -1.05
COL9A1P20849 LINC00622-201ENST00000562811 1570 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 AC034105.3-201ENST00000565294 442 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC8.5□□□□□ -1.05
COL9A1P20849 LINC01841-201ENST00000586698 573 ntTSL 4 BASIC8.5□□□□□ -1.05
COL9A1P20849 AC060766.2-201ENST00000588235 334 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 AC103710.4-201ENST00000609301 899 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 AC002094.4-201ENST00000613598 307 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 AC108467.2-201ENST00000617640 1597 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 AC022106.2-201ENST00000620114 757 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 TACC1-207ENST00000519416 5510 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
COL9A1P20849 TACC1-210ENST00000520615 5509 ntTSL 2 BASIC8.5□□□□□ -1.05
COL9A1P20849 GSN-AS1-201ENST00000414544 4763 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 GEMIN6-201ENST00000281950 3728 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
COL9A1P20849 VIT-202ENST00000379242 2810 ntAPPRIS P3 TSL 2 BASIC8.5□□□□□ -1.05
COL9A1P20849 ABAT-202ENST00000396600 5586 ntAPPRIS P1 TSL 5 BASIC8.5□□□□□ -1.05
COL9A1P20849 KCNS3-202ENST00000403915 2397 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
COL9A1P20849 TDP1-203ENST00000393454 2068 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
COL9A1P20849 RASA2-201ENST00000286364 5614 ntAPPRIS P2 TSL 1 (best) BASIC8.5□□□□□ -1.05
COL9A1P20849 TGIF2-208ENST00000611732 3344 ntAPPRIS P1 TSL 2 BASIC8.5□□□□□ -1.05
COL9A1P20849 ZSCAN9-207ENST00000531979 1601 ntAPPRIS P3 TSL 2 BASIC8.5□□□□□ -1.05
COL9A1P20849 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC8.5□□□□□ -1.05
COL9A1P20849 AL512353.3-201ENST00000417517 1326 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 AC107982.1-201ENST00000507171 1300 ntBASIC8.5□□□□□ -1.05
COL9A1P20849 ZNF226-202ENST00000337433 2565 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
COL9A1P20849 TNFAIP3-210ENST00000620204 3817 ntTSL 5 BASIC8.5□□□□□ -1.05
COL9A1P20849 TRPM8-204ENST00000433712 5291 ntTSL 5 BASIC8.5□□□□□ -1.05
COL9A1P20849 SYTL4-202ENST00000276141 3737 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
COL9A1P20849 TOP1-201ENST00000361337 3738 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
COL9A1P20849 AC068512.1-201ENST00000584542 1811 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
COL9A1P20849 AC008758.1-201ENST00000428311 4505 ntAPPRIS P1 TSL 2 BASIC8.5□□□□□ -1.05
COL9A1P20849 SORBS2-201ENST00000284776 5996 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
COL9A1P20849 ACSBG2-206ENST00000588485 2478 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
COL9A1P20849 MAPK10-312ENST00000641391 2488 ntAPPRIS P2 BASIC8.49□□□□□ -1.05
COL9A1P20849 MAPK10-378ENST00000642009 2463 ntAPPRIS P2 BASIC8.49□□□□□ -1.05
COL9A1P20849 FAM161B-201ENST00000286544 4078 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
COL9A1P20849 EMC1-202ENST00000375208 4084 ntTSL 2 BASIC8.49□□□□□ -1.05
COL9A1P20849 TBC1D8B-206ENST00000481617 4098 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
COL9A1P20849 TOX4-212ENST00000613569 4711 ntAPPRIS P1 TSL 5 BASIC8.49□□□□□ -1.05
COL9A1P20849 PLEKHA3-201ENST00000234453 13880 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
COL9A1P20849 SLITRK3-202ENST00000475390 4555 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms