Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 NCKAP1L-201ENST00000293373 9016 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 ADGRL3-213ENST00000509896 5069 ntTSL 5 BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 AC131971.1-201ENST00000332881 1482 ntBASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 SGMS2-202ENST00000394684 6149 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 ZFYVE9-204ENST00000371591 4874 ntAPPRIS P4 TSL 1 (best) BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 PSD3-220ENST00000615573 5843 ntTSL 5 BASIC7.46□□□□□ -1.22
SHANK3Q9BYB0 COL24A1-201ENST00000370571 6825 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 ART4-201ENST00000228936 5129 ntAPPRIS P2 TSL 1 (best) BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 EEF1A1P30-201ENST00000429708 1315 ntBASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 AC007938.2-201ENST00000604666 2634 ntBASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 GAPDHP42-201ENST00000406848 981 ntBASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 AL354868.1-201ENST00000417077 482 ntBASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 RN7SL591P-201ENST00000496150 292 ntBASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 CYP4F27P-201ENST00000514557 494 ntBASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 MIR4260-201ENST00000583107 67 ntBASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 AL359551.1-201ENST00000442726 2900 ntTSL 2 BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 LRIG2-201ENST00000361127 11555 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 ELP4-229ENST00000640961 8164 ntAPPRIS P2 TSL 1 (best) BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 SPATS2L-227ENST00000619961 6115 ntTSL 2 BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC7.45□□□□□ -1.22
SHANK3Q9BYB0 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 DLG1-202ENST00000357674 4931 ntAPPRIS ALT1 TSL 1 (best) BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 AL390774.1-201ENST00000411924 246 ntBASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 NIFKP3-201ENST00000417799 865 ntBASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 AC096775.1-201ENST00000437724 448 ntBASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 PA2G4P6-201ENST00000438325 1197 ntBASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 AC007537.2-201ENST00000472093 511 ntBASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 AC126615.2-201ENST00000553003 515 ntBASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 AC087763.1-201ENST00000603391 286 ntBASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 TRPM1-202ENST00000397795 5687 ntAPPRIS P3 TSL 1 (best) BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 LRRC8B-203ENST00000439853 7474 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 CAPS2-205ENST00000409445 2135 ntTSL 2 BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 WDCP-202ENST00000406895 3700 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 EPPK1-202ENST00000615648 16002 ntAPPRIS P2 TSL 5 BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 NLGN4Y-203ENST00000382868 5338 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 AC021678.3-201ENST00000517893 476 ntBASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 AP001922.4-201ENST00000526967 290 ntBASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 AL049779.3-201ENST00000557141 606 ntBASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 AC020765.1-201ENST00000604296 328 ntBASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 CDC37L1-AS1-202ENST00000609131 235 ntTSL 2 BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC7.44□□□□□ -1.22
SHANK3Q9BYB0 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
SHANK3Q9BYB0 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC7.43□□□□□ -1.22
SHANK3Q9BYB0 COL6A4P1-202ENST00000487147 4317 ntBASIC7.43□□□□□ -1.22
SHANK3Q9BYB0 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC7.43□□□□□ -1.22
SHANK3Q9BYB0 RBM12-203ENST00000374114 6662 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
SHANK3Q9BYB0 SYNE1-213ENST00000448038 6001 ntTSL 5 BASIC7.43□□□□□ -1.22
SHANK3Q9BYB0 DIO2-210ENST00000557010 6367 ntAPPRIS P1 TSL 2 BASIC7.43□□□□□ -1.22
SHANK3Q9BYB0 PLEKHG4B-201ENST00000283426 11515 ntAPPRIS P2 TSL 1 (best) BASIC7.43□□□□□ -1.22
SHANK3Q9BYB0 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
SHANK3Q9BYB0 PGR-202ENST00000325455 13748 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
SHANK3Q9BYB0 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC7.43□□□□□ -1.22
SHANK3Q9BYB0 MYLK-206ENST00000418370 7282 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
SHANK3Q9BYB0 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC7.43□□□□□ -1.22
SHANK3Q9BYB0 POLR1B-203ENST00000409894 4457 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
SHANK3Q9BYB0 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC7.43□□□□□ -1.22
SHANK3Q9BYB0 DAZ2-202ENST00000382306 3781 ntAPPRIS ALT2 TSL 5 BASIC7.43□□□□□ -1.22
SHANK3Q9BYB0 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
SHANK3Q9BYB0 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms