Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PRDM10-207ENST00000528746 6182 ntTSL 5 BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 DNAH11-201ENST00000328843 13917 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 VPS8-210ENST00000446204 4721 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
VPS13AQ96RL7 CD2-202ENST00000369478 1609 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 CYFIP2-209ENST00000521420 6370 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 AC232271.1-201ENST00000602455 2715 ntBASIC5.55□□□□□ -1.52
VPS13AQ96RL7 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 OR4A40P-201ENST00000533878 948 ntBASIC5.55□□□□□ -1.52
VPS13AQ96RL7 GLRXP2-201ENST00000555594 321 ntBASIC5.55□□□□□ -1.52
VPS13AQ96RL7 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 PANDAR-201ENST00000629595 1506 ntBASIC5.55□□□□□ -1.52
VPS13AQ96RL7 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 AC091046.3-201ENST00000631455 1574 ntBASIC5.55□□□□□ -1.52
VPS13AQ96RL7 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 AL589993.1-201ENST00000407450 2524 ntBASIC5.55□□□□□ -1.52
VPS13AQ96RL7 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 CSMD1-206ENST00000520002 11740 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 CSMD1-216ENST00000602557 11740 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 ZNF471-202ENST00000591537 5859 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 ZSCAN29-202ENST00000396976 5595 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 MYO5A-202ENST00000358212 12220 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 MYO5A-206ENST00000399233 12220 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 OR6D1P-201ENST00000436165 939 ntBASIC5.55□□□□□ -1.52
VPS13AQ96RL7 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 AC103987.1-201ENST00000473394 348 ntBASIC5.55□□□□□ -1.52
VPS13AQ96RL7 AC012560.1-203ENST00000510550 595 ntTSL 4 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 RN7SKP21-201ENST00000516503 220 ntBASIC5.55□□□□□ -1.52
VPS13AQ96RL7 RN7SKP147-201ENST00000517154 244 ntBASIC5.55□□□□□ -1.52
VPS13AQ96RL7 SOX9-AS1-208ENST00000529667 340 ntTSL 3 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 AC145423.1-201ENST00000605712 336 ntBASIC5.55□□□□□ -1.52
VPS13AQ96RL7 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC5.55□□□□□ -1.52
VPS13AQ96RL7 CYP4F35P-202ENST00000636121 390 ntBASIC5.55□□□□□ -1.52
VPS13AQ96RL7 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.55□□□□□ -1.52
VPS13AQ96RL7 KIF1B-212ENST00000622724 8588 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 HSD17B13-202ENST00000328546 2397 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 AC008937.3-201ENST00000606813 1700 ntBASIC5.55□□□□□ -1.52
VPS13AQ96RL7 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 RPL18P10-201ENST00000425606 538 ntBASIC5.55□□□□□ -1.52
VPS13AQ96RL7 AC006978.2-201ENST00000442800 666 ntAPPRIS P1 TSL 3 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 MGAT2P1-201ENST00000449718 797 ntBASIC5.55□□□□□ -1.52
VPS13AQ96RL7 RPL38P3-201ENST00000484463 213 ntBASIC5.55□□□□□ -1.52
VPS13AQ96RL7 RN7SL447P-201ENST00000494711 245 ntBASIC5.55□□□□□ -1.52
VPS13AQ96RL7 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 AC011447.4-201ENST00000587562 111 ntBASIC5.55□□□□□ -1.52
VPS13AQ96RL7 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 AC027348.2-201ENST00000624375 642 ntBASIC5.55□□□□□ -1.52
VPS13AQ96RL7 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 ZEB2-239ENST00000637045 9091 ntTSL 5 BASIC5.55□□□□□ -1.52
VPS13AQ96RL7 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 KLHL5-203ENST00000381930 3288 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 TMTC1-201ENST00000256062 8805 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 AP000350.7-201ENST00000624923 8030 ntBASIC5.54□□□□□ -1.52
VPS13AQ96RL7 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 SNORA67-201ENST00000384423 137 ntBASIC5.54□□□□□ -1.52
VPS13AQ96RL7 CAV1-204ENST00000393470 598 ntTSL 4 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.54□□□□□ -1.52
VPS13AQ96RL7 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 AC092106.1-201ENST00000444291 373 ntBASIC5.54□□□□□ -1.52
VPS13AQ96RL7 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 RPL7P16-201ENST00000479738 738 ntBASIC5.54□□□□□ -1.52
VPS13AQ96RL7 SLC25A15P5-201ENST00000508033 253 ntBASIC5.54□□□□□ -1.52
VPS13AQ96RL7 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 AC069307.1-201ENST00000602820 447 ntBASIC5.54□□□□□ -1.52
VPS13AQ96RL7 AC091193.1-201ENST00000604640 448 ntBASIC5.54□□□□□ -1.52
VPS13AQ96RL7 AC010857.1-201ENST00000606398 594 ntBASIC5.54□□□□□ -1.52
VPS13AQ96RL7 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 MRPS23-201ENST00000313608 5621 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 AP004607.3-201ENST00000530354 3915 ntBASIC5.54□□□□□ -1.52
VPS13AQ96RL7 IL13RA2-202ENST00000371936 1498 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 IQCB2P-201ENST00000401788 1633 ntBASIC5.54□□□□□ -1.52
VPS13AQ96RL7 KNG1-201ENST00000265023 3435 ntAPPRIS ALT1 TSL 2 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS13AQ96RL7 AL031123.3-201ENST00000623345 1837 ntBASIC5.54□□□□□ -1.52
VPS13AQ96RL7 RNA5SP515-201ENST00000364570 118 ntBASIC5.54□□□□□ -1.52
VPS13AQ96RL7 SNORA11C-201ENST00000408532 129 ntBASIC5.54□□□□□ -1.52
VPS13AQ96RL7 AL713922.1-201ENST00000416477 747 ntBASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms