Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC10.12□□□□□ -0.79
CUX2O14529 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CUX2O14529 RAB21-201ENST00000261263 15546 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
CUX2O14529 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
CUX2O14529 PTPRG-AS1-204ENST00000474795 2661 ntTSL 1 (best) BASIC10.11□□□□□ -0.79
CUX2O14529 RN7SKP104-201ENST00000362605 328 ntBASIC10.11□□□□□ -0.79
CUX2O14529 SLC8A1-204ENST00000405269 2965 ntTSL 5 BASIC10.11□□□□□ -0.79
CUX2O14529 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC10.11□□□□□ -0.79
CUX2O14529 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC10.11□□□□□ -0.79
CUX2O14529 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC10.11□□□□□ -0.79
CUX2O14529 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC10.11□□□□□ -0.79
CUX2O14529 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC10.11□□□□□ -0.79
CUX2O14529 AL133406.3-201ENST00000606817 541 ntBASIC10.11□□□□□ -0.79
CUX2O14529 MIR6758-201ENST00000620653 63 ntBASIC10.11□□□□□ -0.79
CUX2O14529 IQCB2P-201ENST00000401788 1633 ntBASIC10.11□□□□□ -0.79
CUX2O14529 VWA3A-202ENST00000389398 4600 ntAPPRIS P2 TSL 5 BASIC10.11□□□□□ -0.79
CUX2O14529 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC10.11□□□□□ -0.79
CUX2O14529 BIN2P1-201ENST00000504996 1530 ntBASIC10.11□□□□□ -0.79
CUX2O14529 EBF1-203ENST00000517373 2277 ntTSL 5 BASIC10.11□□□□□ -0.79
CUX2O14529 FRYL-210ENST00000507711 5277 ntTSL 2 BASIC10.11□□□□□ -0.79
CUX2O14529 HSPA8P14-201ENST00000552265 1805 ntBASIC10.11□□□□□ -0.79
CUX2O14529 KIF6-202ENST00000287152 9082 ntAPPRIS P1 TSL 2 BASIC10.11□□□□□ -0.79
CUX2O14529 CAPRIN1-209ENST00000530820 3454 ntAPPRIS ALT2 TSL 5 BASIC10.11□□□□□ -0.79
CUX2O14529 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
CUX2O14529 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC10.11□□□□□ -0.79
CUX2O14529 EBLN2-201ENST00000533473 1679 ntAPPRIS P1 BASIC10.11□□□□□ -0.79
CUX2O14529 MROH3P-201ENST00000435735 2676 ntBASIC10.11□□□□□ -0.79
CUX2O14529 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC10.11□□□□□ -0.79
CUX2O14529 FAM186A-204ENST00000543111 8200 ntAPPRIS ALT2 TSL 5 BASIC10.11□□□□□ -0.79
CUX2O14529 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC10.11□□□□□ -0.79
CUX2O14529 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC10.11□□□□□ -0.79
CUX2O14529 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC10.1□□□□□ -0.79
CUX2O14529 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC10.1□□□□□ -0.79
CUX2O14529 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC10.1□□□□□ -0.79
CUX2O14529 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC10.1□□□□□ -0.79
CUX2O14529 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC10.1□□□□□ -0.79
CUX2O14529 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC10.1□□□□□ -0.79
CUX2O14529 AC013731.1-201ENST00000604340 883 ntBASIC10.1□□□□□ -0.79
CUX2O14529 AC141002.1-201ENST00000607025 279 ntBASIC10.1□□□□□ -0.79
CUX2O14529 AC021079.1-201ENST00000625268 907 ntTSL 3 BASIC10.1□□□□□ -0.79
CUX2O14529 FGD4-202ENST00000427716 8242 ntAPPRIS P1 TSL 2 BASIC10.1□□□□□ -0.79
CUX2O14529 DCAF10-201ENST00000242323 7393 ntTSL 1 (best) BASIC10.1□□□□□ -0.79
CUX2O14529 MYH15-201ENST00000273353 7074 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
CUX2O14529 KCNMB3P1-202ENST00000493696 3389 ntBASIC10.1□□□□□ -0.79
CUX2O14529 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC10.1□□□□□ -0.79
CUX2O14529 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC10.1□□□□□ -0.79
CUX2O14529 RIF1-206ENST00000453091 8053 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
CUX2O14529 ELMOD2-201ENST00000323570 4409 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
CUX2O14529 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC10.1□□□□□ -0.79
CUX2O14529 RNU105B-201ENST00000364478 208 ntBASIC10.1□□□□□ -0.79
CUX2O14529 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
CUX2O14529 LINC02257-201ENST00000412445 605 ntTSL 2 BASIC10.1□□□□□ -0.79
CUX2O14529 AC068535.1-201ENST00000416008 471 ntTSL 3 BASIC10.1□□□□□ -0.79
CUX2O14529 AC007064.3-201ENST00000422608 359 ntBASIC10.1□□□□□ -0.79
CUX2O14529 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC10.1□□□□□ -0.79
CUX2O14529 AL445928.1-201ENST00000435545 222 ntBASIC10.1□□□□□ -0.79
CUX2O14529 RPL7P45-201ENST00000455851 743 ntBASIC10.1□□□□□ -0.79
CUX2O14529 AC090638.1-201ENST00000498296 909 ntBASIC10.1□□□□□ -0.79
CUX2O14529 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC10.1□□□□□ -0.79
CUX2O14529 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC10.1□□□□□ -0.79
CUX2O14529 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC10.1□□□□□ -0.79
CUX2O14529 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC10.1□□□□□ -0.79
CUX2O14529 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC10.1□□□□□ -0.79
CUX2O14529 AC005084.1-201ENST00000605160 304 ntBASIC10.1□□□□□ -0.79
CUX2O14529 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC10.1□□□□□ -0.79
CUX2O14529 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
CUX2O14529 SYNE3-205ENST00000557275 13488 ntAPPRIS ALT1 TSL 2 BASIC10.09□□□□□ -0.79
CUX2O14529 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC10.09□□□□□ -0.79
CUX2O14529 AC005224.3-201ENST00000584683 2140 ntBASIC10.09□□□□□ -0.79
CUX2O14529 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC10.09□□□□□ -0.79
CUX2O14529 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
CUX2O14529 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
CUX2O14529 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC10.09□□□□□ -0.79
CUX2O14529 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC10.09□□□□□ -0.79
CUX2O14529 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
CUX2O14529 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
CUX2O14529 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC10.09□□□□□ -0.79
CUX2O14529 RNA5SP131-201ENST00000365452 119 ntBASIC10.09□□□□□ -0.79
CUX2O14529 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC10.09□□□□□ -0.79
CUX2O14529 AC008171.1-201ENST00000395058 200 ntBASIC10.09□□□□□ -0.79
CUX2O14529 RPL17P50-201ENST00000396131 546 ntBASIC10.09□□□□□ -0.79
CUX2O14529 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC10.09□□□□□ -0.79
CUX2O14529 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC10.09□□□□□ -0.79
CUX2O14529 UBE2V1P14-201ENST00000415815 558 ntBASIC10.09□□□□□ -0.79
CUX2O14529 RPL17P36-201ENST00000420302 549 ntBASIC10.09□□□□□ -0.79
CUX2O14529 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC10.09□□□□□ -0.79
CUX2O14529 AL133173.1-201ENST00000423458 397 ntBASIC10.09□□□□□ -0.79
CUX2O14529 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC10.09□□□□□ -0.79
CUX2O14529 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC10.09□□□□□ -0.79
CUX2O14529 RNU4ATAC-201ENST00000580972 127 ntBASIC10.09□□□□□ -0.79
CUX2O14529 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC10.09□□□□□ -0.79
CUX2O14529 PPATP2-201ENST00000605635 508 ntBASIC10.09□□□□□ -0.79
CUX2O14529 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC10.09□□□□□ -0.79
CUX2O14529 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC10.09□□□□□ -0.79
CUX2O14529 AL031651.1-201ENST00000615357 1438 ntBASIC10.09□□□□□ -0.79
CUX2O14529 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC10.09□□□□□ -0.79
CUX2O14529 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC10.09□□□□□ -0.79
CUX2O14529 ZNF658B-201ENST00000602828 3408 ntBASIC10.08□□□□□ -0.8
CUX2O14529 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
CUX2O14529 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC10.08□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 93.5 ms