Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 GAPDHP41-201ENST00000613707 975 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 AL118508.4-201ENST00000624142 1176 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
NKX3-1Q99801 SLC10A7-204ENST00000502607 1638 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
NKX3-1Q99801 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.32□□□□□ -1.56
NKX3-1Q99801 AC130360.2-201ENST00000533477 1556 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 AL592429.1-201ENST00000403909 1473 ntBASIC5.32□□□□□ -1.56
NKX3-1Q99801 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
NKX3-1Q99801 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
NKX3-1Q99801 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
NKX3-1Q99801 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
NKX3-1Q99801 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 OR5T3-201ENST00000303059 1023 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 RNA5SP85-201ENST00000365378 119 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 AC099535.1-201ENST00000408928 371 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 DHFRP2-201ENST00000414224 547 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
NKX3-1Q99801 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
NKX3-1Q99801 AL139184.1-202ENST00000422303 222 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 RPL7AP14-201ENST00000424041 802 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 AL139158.1-201ENST00000424719 340 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 RPSAP32-201ENST00000432681 526 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 AL731534.1-201ENST00000434711 269 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
NKX3-1Q99801 GAPDHP37-201ENST00000442317 968 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 RAD1P2-201ENST00000446414 663 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 AL133351.3-201ENST00000454998 193 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 HESX1-202ENST00000473921 757 ntTSL 5 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 RN7SL836P-201ENST00000476140 296 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 AC098818.1-201ENST00000478593 252 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 TRBV8-1-201ENST00000481590 279 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 CR383656.1-201ENST00000484916 377 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 CSNK1A1P3-201ENST00000504105 330 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 WDFY3-AS1-201ENST00000510449 493 ntTSL 3 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 IGHV7-34-1-201ENST00000519200 350 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 AP001000.1-201ENST00000526843 742 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 RPA2P3-201ENST00000533268 770 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 AC023310.2-201ENST00000553844 547 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 AL359232.1-202ENST00000556874 1206 ntTSL 2 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
NKX3-1Q99801 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 AC011500.1-201ENST00000601963 469 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 AL591167.1-201ENST00000607321 456 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 AC068726.1-201ENST00000610993 341 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 Metazoa_SRP.77-201ENST00000616915 252 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 AC089999.3-201ENST00000622440 577 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 ATM-229ENST00000639953 587 ntTSL 5 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
NKX3-1Q99801 AC018717.1-201ENST00000457712 1505 ntBASIC5.31□□□□□ -1.56
NKX3-1Q99801 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
NKX3-1Q99801 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
NKX3-1Q99801 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
NKX3-1Q99801 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
NKX3-1Q99801 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
NKX3-1Q99801 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 CSNK1G1-204ENST00000606793 1658 ntTSL 5 BASIC5.31□□□□□ -1.56
NKX3-1Q99801 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.3□□□□□ -1.56
NKX3-1Q99801 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
NKX3-1Q99801 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 AL161756.3-201ENST00000641216 2071 ntBASIC5.3□□□□□ -1.56
NKX3-1Q99801 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
NKX3-1Q99801 EIF3EP1-201ENST00000433978 1316 ntBASIC5.3□□□□□ -1.56
NKX3-1Q99801 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
NKX3-1Q99801 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
NKX3-1Q99801 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 AC090181.3-201ENST00000624777 1514 ntBASIC5.3□□□□□ -1.56
NKX3-1Q99801 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 RNU6-891P-201ENST00000384280 111 ntBASIC5.3□□□□□ -1.56
NKX3-1Q99801 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 YWHAZP4-201ENST00000392459 708 ntBASIC5.3□□□□□ -1.56
NKX3-1Q99801 AL589994.1-201ENST00000404962 340 ntBASIC5.3□□□□□ -1.56
NKX3-1Q99801 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
NKX3-1Q99801 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC5.3□□□□□ -1.56
NKX3-1Q99801 GTF3AP6-201ENST00000432585 986 ntBASIC5.3□□□□□ -1.56
NKX3-1Q99801 USP24P1-201ENST00000433802 779 ntBASIC5.3□□□□□ -1.56
NKX3-1Q99801 RSL24D1P8-201ENST00000434442 492 ntBASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms