Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 OR7D4-201ENST00000308682 1022 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
LIG3P49916 SEC61G-201ENST00000352861 462 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 RNU4-4P-201ENST00000364588 130 ntBASIC7.38□□□□□ -1.23
LIG3P49916 TRAV12-3-201ENST00000390442 399 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
LIG3P49916 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC7.38□□□□□ -1.23
LIG3P49916 DNAJC19P6-201ENST00000401853 280 ntBASIC7.38□□□□□ -1.23
LIG3P49916 AL121978.1-201ENST00000402778 359 ntBASIC7.38□□□□□ -1.23
LIG3P49916 SETP15-201ENST00000412724 337 ntBASIC7.38□□□□□ -1.23
LIG3P49916 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC7.38□□□□□ -1.23
LIG3P49916 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC7.38□□□□□ -1.23
LIG3P49916 LINC00462-201ENST00000425350 962 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC7.38□□□□□ -1.23
LIG3P49916 AF274573.1-201ENST00000430535 494 ntBASIC7.38□□□□□ -1.23
LIG3P49916 RPL5P27-201ENST00000437011 881 ntBASIC7.38□□□□□ -1.23
LIG3P49916 FGF7P5-201ENST00000441829 291 ntBASIC7.38□□□□□ -1.23
LIG3P49916 MTND5P2-201ENST00000442927 1142 ntBASIC7.38□□□□□ -1.23
LIG3P49916 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC7.38□□□□□ -1.23
LIG3P49916 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC7.38□□□□□ -1.23
LIG3P49916 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 RPS27AP8-201ENST00000452665 445 ntBASIC7.38□□□□□ -1.23
LIG3P49916 MRPL42P4-201ENST00000453267 443 ntBASIC7.38□□□□□ -1.23
LIG3P49916 NECAP1P2-201ENST00000455668 727 ntBASIC7.38□□□□□ -1.23
LIG3P49916 CTSLP6-201ENST00000458273 1002 ntBASIC7.38□□□□□ -1.23
LIG3P49916 PGBD4P1-201ENST00000473644 407 ntBASIC7.38□□□□□ -1.23
LIG3P49916 LINC00518-202ENST00000479822 906 ntTSL 3 BASIC7.38□□□□□ -1.23
LIG3P49916 AC023866.2-201ENST00000521378 387 ntTSL 3 BASIC7.38□□□□□ -1.23
LIG3P49916 AP000893.2-201ENST00000527550 433 ntTSL 5 BASIC7.38□□□□□ -1.23
LIG3P49916 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC7.38□□□□□ -1.23
LIG3P49916 PDCL2P2-201ENST00000533651 189 ntBASIC7.38□□□□□ -1.23
LIG3P49916 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 PSMA3-AS1-206ENST00000555037 446 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 SRSF5-209ENST00000555349 565 ntTSL 4 BASIC7.38□□□□□ -1.23
LIG3P49916 AL162171.2-201ENST00000555444 905 ntTSL 3 BASIC7.38□□□□□ -1.23
LIG3P49916 AC027807.1-201ENST00000559921 996 ntBASIC7.38□□□□□ -1.23
LIG3P49916 AC090826.1-203ENST00000569235 490 ntBASIC7.38□□□□□ -1.23
LIG3P49916 AC087463.3-201ENST00000570105 415 ntTSL 3 BASIC7.38□□□□□ -1.23
LIG3P49916 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC7.38□□□□□ -1.23
LIG3P49916 RN7SL657P-201ENST00000582431 293 ntBASIC7.38□□□□□ -1.23
LIG3P49916 AC011193.2-201ENST00000582638 367 ntBASIC7.38□□□□□ -1.23
LIG3P49916 AC022069.1-201ENST00000582910 658 ntBASIC7.38□□□□□ -1.23
LIG3P49916 ODF4-202ENST00000584943 804 ntAPPRIS ALT2 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC7.38□□□□□ -1.23
LIG3P49916 ZNF730-201ENST00000593635 464 ntTSL 3 BASIC7.38□□□□□ -1.23
LIG3P49916 AC074135.1-202ENST00000600223 563 ntTSL 3 BASIC7.38□□□□□ -1.23
LIG3P49916 DEFB131E-202ENST00000602581 683 ntBASIC7.38□□□□□ -1.23
LIG3P49916 AL590229.1-201ENST00000603497 542 ntBASIC7.38□□□□□ -1.23
LIG3P49916 AC080078.2-201ENST00000603766 501 ntBASIC7.38□□□□□ -1.23
LIG3P49916 AC021749.1-201ENST00000604322 607 ntBASIC7.38□□□□□ -1.23
LIG3P49916 AC124312.4-201ENST00000605533 310 ntBASIC7.38□□□□□ -1.23
LIG3P49916 AL136139.1-201ENST00000605568 222 ntBASIC7.38□□□□□ -1.23
LIG3P49916 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC7.38□□□□□ -1.23
LIG3P49916 HNF4A-AS1-202ENST00000609152 413 ntTSL 3 BASIC7.38□□□□□ -1.23
LIG3P49916 AC245033.2-201ENST00000621893 421 ntTSL 3 BASIC7.38□□□□□ -1.23
LIG3P49916 AC021079.1-201ENST00000625268 907 ntTSL 3 BASIC7.38□□□□□ -1.23
LIG3P49916 LINC01427-203ENST00000635277 781 ntTSL 5 BASIC7.38□□□□□ -1.23
LIG3P49916 AL160396.1-201ENST00000637433 575 ntTSL 4 BASIC7.38□□□□□ -1.23
LIG3P49916 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC7.38□□□□□ -1.23
LIG3P49916 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC7.38□□□□□ -1.23
LIG3P49916 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC7.38□□□□□ -1.23
LIG3P49916 LCOR-201ENST00000286067 4542 ntBASIC7.38□□□□□ -1.23
LIG3P49916 TMC5-208ENST00000564959 2434 ntTSL 2 BASIC7.38□□□□□ -1.23
LIG3P49916 AGXT2-201ENST00000231420 2364 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 LINC02275-201ENST00000508313 4365 ntTSL 2 BASIC7.38□□□□□ -1.23
LIG3P49916 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 LRBA-209ENST00000510413 10032 ntAPPRIS ALT2 TSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
LIG3P49916 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
LIG3P49916 MANSC1-204ENST00000545735 1501 ntTSL 2 BASIC7.37□□□□□ -1.23
LIG3P49916 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
LIG3P49916 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC7.37□□□□□ -1.23
LIG3P49916 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
LIG3P49916 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
LIG3P49916 DCAF13-210ENST00000618975 2038 ntTSL 2 BASIC7.37□□□□□ -1.23
LIG3P49916 AL662795.2-201ENST00000624252 3706 ntBASIC7.37□□□□□ -1.23
LIG3P49916 ECI2-204ENST00000380125 1405 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
LIG3P49916 WNK1-220ENST00000574564 1401 ntBASIC7.37□□□□□ -1.23
LIG3P49916 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC7.37□□□□□ -1.23
LIG3P49916 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
LIG3P49916 PPCS-201ENST00000372556 984 ntTSL 2 BASIC7.37□□□□□ -1.23
LIG3P49916 XAGE5-202ENST00000375501 415 ntAPPRIS P1 TSL 5 BASIC7.37□□□□□ -1.23
LIG3P49916 SUMO2P13-201ENST00000403109 272 ntBASIC7.37□□□□□ -1.23
LIG3P49916 SNORA3.1-201ENST00000408166 111 ntBASIC7.37□□□□□ -1.23
LIG3P49916 Z75741.2-201ENST00000417272 1167 ntBASIC7.37□□□□□ -1.23
LIG3P49916 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC7.37□□□□□ -1.23
LIG3P49916 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC7.37□□□□□ -1.23
LIG3P49916 AC011233.1-201ENST00000422812 283 ntBASIC7.37□□□□□ -1.23
LIG3P49916 ISCA1P2-201ENST00000438679 421 ntBASIC7.37□□□□□ -1.23
LIG3P49916 AC092393.1-201ENST00000439625 742 ntBASIC7.37□□□□□ -1.23
LIG3P49916 AL592437.1-201ENST00000443781 492 ntBASIC7.37□□□□□ -1.23
LIG3P49916 RNU7-125P-201ENST00000458760 62 ntBASIC7.37□□□□□ -1.23
LIG3P49916 RPL5P13-201ENST00000462840 709 ntBASIC7.37□□□□□ -1.23
LIG3P49916 SNORA31.13-201ENST00000516624 135 ntBASIC7.37□□□□□ -1.23
LIG3P49916 C14orf159-213ENST00000519019 834 ntTSL 3 BASIC7.37□□□□□ -1.23
LIG3P49916 AP000873.2-209ENST00000528083 547 ntTSL 4 BASIC7.37□□□□□ -1.23
LIG3P49916 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC7.37□□□□□ -1.23
LIG3P49916 AC011611.6-201ENST00000547483 255 ntBASIC7.37□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms