Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ZNF146-201ENST00000443387 3326 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
BRCA1P38398 SECISBP2L-209ENST00000559471 7176 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
BRCA1P38398 SPTLC3-201ENST00000399002 6169 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
BRCA1P38398 SSX3-202ENST00000376893 800 ntTSL 2 BASIC7.05□□□□□ -1.28
BRCA1P38398 CYB5AP4-201ENST00000396692 399 ntBASIC7.05□□□□□ -1.28
BRCA1P38398 RPL23AP18-201ENST00000416139 468 ntBASIC7.05□□□□□ -1.28
BRCA1P38398 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
BRCA1P38398 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC7.05□□□□□ -1.28
BRCA1P38398 RN7SL459P-201ENST00000481078 302 ntBASIC7.05□□□□□ -1.28
BRCA1P38398 RPL38P3-201ENST00000484463 213 ntBASIC7.05□□□□□ -1.28
BRCA1P38398 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC7.05□□□□□ -1.28
BRCA1P38398 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC7.05□□□□□ -1.28
BRCA1P38398 SH3PXD2A-202ENST00000355946 11245 ntAPPRIS P2 TSL 1 (best) BASIC7.05□□□□□ -1.28
BRCA1P38398 ITPK1-AS1-201ENST00000553639 4701 ntBASIC7.05□□□□□ -1.28
BRCA1P38398 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC7.05□□□□□ -1.28
BRCA1P38398 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC7.05□□□□□ -1.28
BRCA1P38398 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC7.05□□□□□ -1.28
BRCA1P38398 WASHC4-214ENST00000620430 5807 ntAPPRIS ALT1 TSL 1 (best) BASIC7.05□□□□□ -1.28
BRCA1P38398 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
BRCA1P38398 NRCAM-205ENST00000413765 6406 ntTSL 2 BASIC7.05□□□□□ -1.28
BRCA1P38398 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
BRCA1P38398 STAB2-201ENST00000388887 8251 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
BRCA1P38398 EPHA1-AS1-202ENST00000429289 5018 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
BRCA1P38398 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC7.05□□□□□ -1.28
BRCA1P38398 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
BRCA1P38398 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC7.04□□□□□ -1.28
BRCA1P38398 AL035419.1-201ENST00000397037 564 ntBASIC7.04□□□□□ -1.28
BRCA1P38398 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
BRCA1P38398 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC7.04□□□□□ -1.28
BRCA1P38398 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC7.04□□□□□ -1.28
BRCA1P38398 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC7.04□□□□□ -1.28
BRCA1P38398 AC092905.1-201ENST00000467527 949 ntBASIC7.04□□□□□ -1.28
BRCA1P38398 RN7SL738P-201ENST00000470264 297 ntBASIC7.04□□□□□ -1.28
BRCA1P38398 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
BRCA1P38398 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC7.04□□□□□ -1.28
BRCA1P38398 AC025574.2-201ENST00000615621 514 ntBASIC7.04□□□□□ -1.28
BRCA1P38398 AC087385.3-201ENST00000620477 187 ntBASIC7.04□□□□□ -1.28
BRCA1P38398 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC7.04□□□□□ -1.28
BRCA1P38398 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
BRCA1P38398 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
BRCA1P38398 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
BRCA1P38398 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
BRCA1P38398 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
BRCA1P38398 AC011525.1-201ENST00000562167 5676 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
BRCA1P38398 NRXN3-201ENST00000281127 8504 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
BRCA1P38398 ATR-201ENST00000350721 8249 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
BRCA1P38398 CYFIP1-208ENST00000617928 6793 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
BRCA1P38398 ADIG-201ENST00000373348 430 ntTSL 2 BASIC7.04□□□□□ -1.28
BRCA1P38398 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
BRCA1P38398 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC7.04□□□□□ -1.28
BRCA1P38398 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC7.04□□□□□ -1.28
BRCA1P38398 AC090142.2-201ENST00000483263 416 ntBASIC7.04□□□□□ -1.28
BRCA1P38398 RN7SL570P-201ENST00000484405 292 ntBASIC7.04□□□□□ -1.28
BRCA1P38398 AC093267.1-201ENST00000489176 961 ntBASIC7.04□□□□□ -1.28
BRCA1P38398 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC7.04□□□□□ -1.28
BRCA1P38398 MGST2-204ENST00000506797 634 ntTSL 2 BASIC7.04□□□□□ -1.28
BRCA1P38398 AC244502.2-201ENST00000543361 851 ntBASIC7.04□□□□□ -1.28
BRCA1P38398 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC7.04□□□□□ -1.28
BRCA1P38398 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC7.04□□□□□ -1.28
BRCA1P38398 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
BRCA1P38398 AL133406.3-201ENST00000606817 541 ntBASIC7.04□□□□□ -1.28
BRCA1P38398 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
BRCA1P38398 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
BRCA1P38398 AL358394.2-201ENST00000427229 3637 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
BRCA1P38398 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
BRCA1P38398 MAK-202ENST00000354489 3941 ntTSL 5 BASIC7.04□□□□□ -1.28
BRCA1P38398 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC7.03□□□□□ -1.28
BRCA1P38398 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
BRCA1P38398 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC7.03□□□□□ -1.28
BRCA1P38398 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC7.03□□□□□ -1.28
BRCA1P38398 GAN-202ENST00000568107 15244 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
BRCA1P38398 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
BRCA1P38398 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC7.03□□□□□ -1.28
BRCA1P38398 OR52I1-202ENST00000530443 2961 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
BRCA1P38398 KCNJ1-205ENST00000392666 2621 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
BRCA1P38398 UBE4B-202ENST00000343090 5267 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
BRCA1P38398 ODF2L-201ENST00000294678 4267 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
BRCA1P38398 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC7.03□□□□□ -1.28
BRCA1P38398 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC7.03□□□□□ -1.28
BRCA1P38398 DSTNP5-201ENST00000427921 523 ntBASIC7.03□□□□□ -1.28
BRCA1P38398 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC7.03□□□□□ -1.28
BRCA1P38398 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
BRCA1P38398 AC073916.1-201ENST00000545095 130 ntBASIC7.03□□□□□ -1.28
BRCA1P38398 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC7.03□□□□□ -1.28
BRCA1P38398 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
BRCA1P38398 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
BRCA1P38398 AC006116.3-201ENST00000592968 361 ntBASIC7.03□□□□□ -1.28
BRCA1P38398 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC7.03□□□□□ -1.28
BRCA1P38398 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC7.03□□□□□ -1.28
BRCA1P38398 AC131971.1-201ENST00000332881 1482 ntBASIC7.03□□□□□ -1.28
BRCA1P38398 FCHSD2-203ENST00000409314 4509 ntTSL 5 BASIC7.03□□□□□ -1.28
BRCA1P38398 PPM1L-205ENST00000498165 10934 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
BRCA1P38398 AP002364.1-201ENST00000623330 3386 ntBASIC7.03□□□□□ -1.28
BRCA1P38398 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC7.03□□□□□ -1.28
BRCA1P38398 RC3H1-203ENST00000367696 11261 ntAPPRIS P3 TSL 5 BASIC7.03□□□□□ -1.28
BRCA1P38398 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC7.03□□□□□ -1.28
BRCA1P38398 ADA2-203ENST00000399837 4505 ntAPPRIS P3 TSL 1 (best) BASIC7.03□□□□□ -1.28
BRCA1P38398 ABCA11P-202ENST00000504019 2110 ntBASIC7.03□□□□□ -1.28
BRCA1P38398 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC7.03□□□□□ -1.28
BRCA1P38398 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms