Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 PSG10P-201ENST00000501199 1500 ntBASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
CCDC3Q9BQI4 GUCY1B2-204ENST00000531898 1979 ntBASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 AFF2-203ENST00000370457 3952 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 OR8U1-201ENST00000302270 930 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 TMSB4XP4-201ENST00000323496 618 ntBASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 TMSB4XP2-201ENST00000335179 210 ntBASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 MIR433-201ENST00000384837 93 ntBASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 RNU6-316P-201ENST00000391027 107 ntBASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 RPL35AP31-201ENST00000418340 337 ntBASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 LINC00310-202ENST00000419881 910 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 AC005077.1-201ENST00000449226 375 ntBASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 AC093719.1-201ENST00000480427 441 ntBASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 SCARNA21.2-201ENST00000516600 166 ntBASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 AC022960.2-201ENST00000616300 666 ntBASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 TCL6_3.1-201ENST00000619064 137 ntBASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 REV3L-214ENST00000619481 969 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 AC096708.4-201ENST00000620563 552 ntBASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 AC138627.1-204ENST00000641894 765 ntBASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 AC022325.1-201ENST00000502748 2199 ntBASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 AL161901.1-201ENST00000624954 3425 ntBASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 AC092724.1-201ENST00000624623 3397 ntBASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 RIOK2-202ENST00000508447 2149 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.98□□□□□ -1.45
CCDC3Q9BQI4 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 PEAK1-202ENST00000558305 4644 ntTSL 4 BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 AL391261.1-201ENST00000555712 1479 ntBASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 QRSL1-202ENST00000369046 4106 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 AL445238.1-204ENST00000400311 463 ntBASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 AL096800.1-201ENST00000405326 893 ntBASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 AL451046.1-201ENST00000406097 534 ntBASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 AL355355.1-201ENST00000442900 793 ntBASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 FTLP8-201ENST00000446770 267 ntBASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 AL157385.1-201ENST00000446973 268 ntBASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 AC011476.1-201ENST00000466725 307 ntBASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 SCARNA18.1-201ENST00000516330 83 ntBASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 AC092865.1-201ENST00000544395 1023 ntBASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 BICD1-206ENST00000551086 423 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 AL121579.2-201ENST00000555466 590 ntBASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 AP005119.1-201ENST00000580956 292 ntBASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 CASC22-202ENST00000628396 802 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 MTCO1P11-201ENST00000429111 1528 ntBASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 BIN2P1-201ENST00000504996 1530 ntBASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC3Q9BQI4 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 159 ms