Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 PEX12P1-201ENST00000400284 1048 ntBASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 MYL6P5-201ENST00000412707 459 ntBASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 AC004012.1-201ENST00000416593 534 ntTSL 4 BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 FGF12-202ENST00000430714 603 ntTSL 2 BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 RPS7P10-201ENST00000464254 603 ntBASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 AC098818.1-201ENST00000478593 252 ntBASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 AC079080.1-201ENST00000479841 822 ntBASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 NPM1P28-201ENST00000492269 840 ntBASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 CCDC11P1-201ENST00000503137 1162 ntBASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 AC018645.1-201ENST00000505003 109 ntBASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 AC024405.1-201ENST00000532521 1042 ntBASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 AP001858.2-201ENST00000536213 601 ntBASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 AC136285.2-201ENST00000562873 378 ntTSL 3 BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 AC133552.4-201ENST00000576103 676 ntBASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 MIR4732-201ENST00000581873 76 ntBASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 AC020914.2-201ENST00000598220 430 ntTSL 4 BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 AC083798.2-201ENST00000608756 1152 ntTSL 4 BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 RN7SL261P-201ENST00000613441 282 ntBASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 MIR7109-201ENST00000613748 65 ntBASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 SMR3B-204ENST00000614072 783 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 UGP2-232ENST00000640075 567 ntTSL 5 BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 TEK-205ENST00000615002 4666 ntTSL 5 BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 RPS2P45-201ENST00000469997 2057 ntBASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC6.62□□□□□ -1.35
CCDC112Q8NEF3 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 CLC-201ENST00000221804 635 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 CCL1-201ENST00000225842 592 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 AC107977.1-201ENST00000355745 939 ntBASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 RNU1-84P-201ENST00000365447 164 ntBASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 RN7SKP187-201ENST00000365536 330 ntBASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 SNORA7A-201ENST00000384765 139 ntBASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 RAB5CP1-201ENST00000395972 580 ntBASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 NPM1P18-201ENST00000434232 732 ntBASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 COL11A2P1-205ENST00000441798 676 ntBASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 AKR1D1P1-201ENST00000457236 936 ntBASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 AC015524.1-201ENST00000491585 472 ntBASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 CENPK-211ENST00000510693 1040 ntTSL 5 BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 SNORA70.11-201ENST00000515987 138 ntBASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 SNORA70.13-201ENST00000516116 138 ntBASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 RN7SKP70-201ENST00000516655 271 ntBASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 RN7SKP183-201ENST00000517169 324 ntBASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 AC027216.1-201ENST00000577726 685 ntBASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 AC011500.1-201ENST00000601963 469 ntBASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 AC141002.1-201ENST00000607025 279 ntBASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 AC096708.4-201ENST00000620563 552 ntBASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC112Q8NEF3 ZNF112-201ENST00000337401 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC112Q8NEF3 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC112Q8NEF3 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC112Q8NEF3 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC112Q8NEF3 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC112Q8NEF3 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC6.6□□□□□ -1.35
CCDC112Q8NEF3 RNU1-49P-201ENST00000363468 159 ntBASIC6.6□□□□□ -1.35
CCDC112Q8NEF3 RN7SKP250-201ENST00000363924 321 ntBASIC6.6□□□□□ -1.35
CCDC112Q8NEF3 RN7SKP121-201ENST00000410842 305 ntBASIC6.6□□□□□ -1.35
CCDC112Q8NEF3 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC6.6□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms