Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ACO1-201ENST00000309951 7466 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A1P20908 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A1P20908 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.5
COL5A1P20908 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A1P20908 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A1P20908 TRIM64-201ENST00000533122 2691 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A1P20908 IL22RA2-203ENST00000349184 2801 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A1P20908 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A1P20908 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC5.71□□□□□ -1.5
COL5A1P20908 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A1P20908 CDY2A-201ENST00000250838 1954 ntAPPRIS ALT1 BASIC5.71□□□□□ -1.5
COL5A1P20908 DOCK11P1-201ENST00000553480 5932 ntBASIC5.71□□□□□ -1.5
COL5A1P20908 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A1P20908 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A1P20908 NRCAM-204ENST00000379028 6685 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
COL5A1P20908 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A1P20908 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
COL5A1P20908 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
COL5A1P20908 RN7SKP103-201ENST00000363848 320 ntBASIC5.71□□□□□ -1.5
COL5A1P20908 RPL35AP24-201ENST00000413846 330 ntBASIC5.71□□□□□ -1.5
COL5A1P20908 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC5.71□□□□□ -1.5
COL5A1P20908 FTH1P8-201ENST00000498161 514 ntBASIC5.71□□□□□ -1.5
COL5A1P20908 NRBF2P4-201ENST00000520874 850 ntBASIC5.71□□□□□ -1.5
COL5A1P20908 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A1P20908 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC5.71□□□□□ -1.5
COL5A1P20908 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC5.71□□□□□ -1.5
COL5A1P20908 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC5.71□□□□□ -1.5
COL5A1P20908 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC5.71□□□□□ -1.5
COL5A1P20908 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A1P20908 CASC19-248ENST00000641674 1356 ntBASIC5.71□□□□□ -1.5
COL5A1P20908 GCNT1-202ENST00000442371 5972 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A1P20908 PARP4P2-201ENST00000446672 3326 ntBASIC5.71□□□□□ -1.5
COL5A1P20908 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.71□□□□□ -1.5
COL5A1P20908 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A1P20908 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
COL5A1P20908 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC5.71□□□□□ -1.5
COL5A1P20908 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL5A1P20908 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL5A1P20908 AMOT-206ENST00000524145 3330 ntAPPRIS ALT2 TSL 5 BASIC5.7□□□□□ -1.5
COL5A1P20908 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL5A1P20908 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
COL5A1P20908 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC5.7□□□□□ -1.5
COL5A1P20908 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL5A1P20908 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL5A1P20908 OR10R3P-201ENST00000361688 942 ntBASIC5.7□□□□□ -1.5
COL5A1P20908 RNA5-8SP5-201ENST00000365304 152 ntBASIC5.7□□□□□ -1.5
COL5A1P20908 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL5A1P20908 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL5A1P20908 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC5.7□□□□□ -1.5
COL5A1P20908 RN7SKP29-201ENST00000410957 272 ntBASIC5.7□□□□□ -1.5
COL5A1P20908 TMA16P2-201ENST00000413187 601 ntBASIC5.7□□□□□ -1.5
COL5A1P20908 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.7□□□□□ -1.5
COL5A1P20908 HMGA1P8-201ENST00000414130 321 ntBASIC5.7□□□□□ -1.5
COL5A1P20908 TNPO1P1-201ENST00000423641 1138 ntBASIC5.7□□□□□ -1.5
COL5A1P20908 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.7□□□□□ -1.5
COL5A1P20908 RPS7P3-201ENST00000443360 580 ntBASIC5.7□□□□□ -1.5
COL5A1P20908 AC108161.1-201ENST00000461060 402 ntBASIC5.7□□□□□ -1.5
COL5A1P20908 RPL17P2-201ENST00000491913 451 ntBASIC5.7□□□□□ -1.5
COL5A1P20908 AC008953.1-201ENST00000497334 318 ntBASIC5.7□□□□□ -1.5
COL5A1P20908 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC5.7□□□□□ -1.5
COL5A1P20908 OR4A42P-201ENST00000531397 938 ntBASIC5.7□□□□□ -1.5
COL5A1P20908 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC5.7□□□□□ -1.5
COL5A1P20908 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC5.7□□□□□ -1.5
COL5A1P20908 AC009145.2-201ENST00000562685 377 ntTSL 3 BASIC5.7□□□□□ -1.5
COL5A1P20908 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.7□□□□□ -1.5
COL5A1P20908 LINC02019-201ENST00000608605 2060 ntBASIC5.7□□□□□ -1.5
COL5A1P20908 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC5.7□□□□□ -1.5
COL5A1P20908 AL137246.2-201ENST00000613439 662 ntBASIC5.7□□□□□ -1.5
COL5A1P20908 AL139099.4-201ENST00000614802 114 ntBASIC5.7□□□□□ -1.5
COL5A1P20908 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC5.7□□□□□ -1.5
COL5A1P20908 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC5.7□□□□□ -1.5
COL5A1P20908 AL034408.1-201ENST00000637712 664 ntBASIC5.7□□□□□ -1.5
COL5A1P20908 AC087269.2-201ENST00000641764 975 ntBASIC5.7□□□□□ -1.5
COL5A1P20908 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL5A1P20908 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL5A1P20908 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
COL5A1P20908 AOX3P-204ENST00000491025 2107 ntBASIC5.7□□□□□ -1.5
COL5A1P20908 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
COL5A1P20908 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
COL5A1P20908 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
COL5A1P20908 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
COL5A1P20908 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A1P20908 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5.69□□□□□ -1.5
COL5A1P20908 RPS4XP5-201ENST00000419038 768 ntBASIC5.69□□□□□ -1.5
COL5A1P20908 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC5.69□□□□□ -1.5
COL5A1P20908 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC5.69□□□□□ -1.5
COL5A1P20908 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC5.69□□□□□ -1.5
COL5A1P20908 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.69□□□□□ -1.5
COL5A1P20908 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.69□□□□□ -1.5
COL5A1P20908 AC112187.1-201ENST00000455837 479 ntBASIC5.69□□□□□ -1.5
COL5A1P20908 RN7SL583P-201ENST00000475692 287 ntBASIC5.69□□□□□ -1.5
COL5A1P20908 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.69□□□□□ -1.5
COL5A1P20908 OR7E158P-201ENST00000524483 910 ntBASIC5.69□□□□□ -1.5
COL5A1P20908 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.69□□□□□ -1.5
COL5A1P20908 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC5.69□□□□□ -1.5
COL5A1P20908 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
COL5A1P20908 TXNP4-201ENST00000575018 310 ntBASIC5.69□□□□□ -1.5
COL5A1P20908 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC5.69□□□□□ -1.5
COL5A1P20908 ELOCP28-201ENST00000590044 317 ntBASIC5.69□□□□□ -1.5
COL5A1P20908 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms