Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 YWHAZP6-201ENST00000399764 738 ntBASIC5.65□□□□□ -1.5
SDC1P18827 RPA3-204ENST00000406109 434 ntTSL 3 BASIC5.65□□□□□ -1.5
SDC1P18827 SNRPEP6-201ENST00000407465 277 ntBASIC5.65□□□□□ -1.5
SDC1P18827 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.65□□□□□ -1.5
SDC1P18827 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.65□□□□□ -1.5
SDC1P18827 GAPDHP59-201ENST00000435908 267 ntBASIC5.65□□□□□ -1.5
SDC1P18827 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
SDC1P18827 RPS12P17-201ENST00000438591 377 ntBASIC5.65□□□□□ -1.5
SDC1P18827 AC010240.2-201ENST00000445363 1205 ntBASIC5.65□□□□□ -1.5
SDC1P18827 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC5.65□□□□□ -1.5
SDC1P18827 AC106822.1-201ENST00000502647 526 ntBASIC5.65□□□□□ -1.5
SDC1P18827 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.65□□□□□ -1.5
SDC1P18827 MRPS5P3-201ENST00000515577 166 ntBASIC5.65□□□□□ -1.5
SDC1P18827 IGKV2-19-201ENST00000518132 283 ntBASIC5.65□□□□□ -1.5
SDC1P18827 AC116917.1-201ENST00000520558 305 ntBASIC5.65□□□□□ -1.5
SDC1P18827 TPT1-AS1-209ENST00000520585 818 ntTSL 5 BASIC5.65□□□□□ -1.5
SDC1P18827 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC5.65□□□□□ -1.5
SDC1P18827 OR4A42P-201ENST00000531397 938 ntBASIC5.65□□□□□ -1.5
SDC1P18827 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.65□□□□□ -1.5
SDC1P18827 AC126615.2-201ENST00000553003 515 ntBASIC5.65□□□□□ -1.5
SDC1P18827 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.65□□□□□ -1.5
SDC1P18827 AL132989.1-201ENST00000557322 576 ntTSL 3 BASIC5.65□□□□□ -1.5
SDC1P18827 AC137800.1-201ENST00000562976 573 ntTSL 4 BASIC5.65□□□□□ -1.5
SDC1P18827 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.65□□□□□ -1.5
SDC1P18827 AC090826.1-203ENST00000569235 490 ntBASIC5.65□□□□□ -1.5
SDC1P18827 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC5.65□□□□□ -1.5
SDC1P18827 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.65□□□□□ -1.5
SDC1P18827 AC060780.2-201ENST00000589047 198 ntBASIC5.65□□□□□ -1.5
SDC1P18827 AL445670.1-201ENST00000618889 801 ntBASIC5.65□□□□□ -1.5
SDC1P18827 AL357140.4-201ENST00000636827 412 ntBASIC5.65□□□□□ -1.5
SDC1P18827 AC134980.1-214ENST00000638815 687 ntTSL 5 BASIC5.65□□□□□ -1.5
SDC1P18827 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
SDC1P18827 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
SDC1P18827 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
SDC1P18827 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
SDC1P18827 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
SDC1P18827 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
SDC1P18827 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
SDC1P18827 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
SDC1P18827 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
SDC1P18827 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
SDC1P18827 GNL2P1-201ENST00000451274 2190 ntBASIC5.65□□□□□ -1.51
SDC1P18827 AL591135.1-201ENST00000401578 5914 ntBASIC5.64□□□□□ -1.51
SDC1P18827 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
SDC1P18827 AC138907.8-201ENST00000623981 2256 ntBASIC5.64□□□□□ -1.51
SDC1P18827 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
SDC1P18827 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SDC1P18827 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SDC1P18827 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SDC1P18827 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
SDC1P18827 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SDC1P18827 U3.10-201ENST00000364459 214 ntBASIC5.64□□□□□ -1.51
SDC1P18827 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
SDC1P18827 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
SDC1P18827 RN7SKP17-201ENST00000411242 351 ntBASIC5.64□□□□□ -1.51
SDC1P18827 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC5.64□□□□□ -1.51
SDC1P18827 NME1P1-201ENST00000420914 382 ntBASIC5.64□□□□□ -1.51
SDC1P18827 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC5.64□□□□□ -1.51
SDC1P18827 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.64□□□□□ -1.51
SDC1P18827 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC5.64□□□□□ -1.51
SDC1P18827 RPSAP65-201ENST00000429660 595 ntBASIC5.64□□□□□ -1.51
SDC1P18827 AL445928.1-201ENST00000435545 222 ntBASIC5.64□□□□□ -1.51
SDC1P18827 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC5.64□□□□□ -1.51
SDC1P18827 MRPS33-203ENST00000467334 622 ntTSL 2 BASIC5.64□□□□□ -1.51
SDC1P18827 RPS27P20-201ENST00000492051 246 ntBASIC5.64□□□□□ -1.51
SDC1P18827 RN7SL362P-201ENST00000494228 267 ntBASIC5.64□□□□□ -1.51
SDC1P18827 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.64□□□□□ -1.51
SDC1P18827 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC5.64□□□□□ -1.51
SDC1P18827 AC008629.2-201ENST00000503783 483 ntBASIC5.64□□□□□ -1.51
SDC1P18827 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC5.64□□□□□ -1.51
SDC1P18827 MAST4-IT1-201ENST00000514241 658 ntBASIC5.64□□□□□ -1.51
SDC1P18827 MIR2117-201ENST00000516780 80 ntBASIC5.64□□□□□ -1.51
SDC1P18827 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC5.64□□□□□ -1.51
SDC1P18827 LINC00640-204ENST00000557295 708 ntTSL 5 BASIC5.64□□□□□ -1.51
SDC1P18827 RORA-AS2-202ENST00000561413 576 ntTSL 4 BASIC5.64□□□□□ -1.51
SDC1P18827 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC5.64□□□□□ -1.51
SDC1P18827 DISC1FP1-203ENST00000562678 796 ntTSL 3 BASIC5.64□□□□□ -1.51
SDC1P18827 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
SDC1P18827 AC007346.1-201ENST00000569208 867 ntBASIC5.64□□□□□ -1.51
SDC1P18827 SETP3-201ENST00000581726 813 ntBASIC5.64□□□□□ -1.51
SDC1P18827 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC5.64□□□□□ -1.51
SDC1P18827 LINC01533-204ENST00000590719 435 ntTSL 5 BASIC5.64□□□□□ -1.51
SDC1P18827 AC068768.2-201ENST00000602352 343 ntBASIC5.64□□□□□ -1.51
SDC1P18827 AC009237.12-201ENST00000604755 742 ntBASIC5.64□□□□□ -1.51
SDC1P18827 AC091769.2-201ENST00000605385 479 ntTSL 4 BASIC5.64□□□□□ -1.51
SDC1P18827 AC073389.3-201ENST00000609434 935 ntBASIC5.64□□□□□ -1.51
SDC1P18827 uc_338.29-201ENST00000615099 168 ntBASIC5.64□□□□□ -1.51
SDC1P18827 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC5.64□□□□□ -1.51
SDC1P18827 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC5.64□□□□□ -1.51
SDC1P18827 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC5.64□□□□□ -1.51
SDC1P18827 AC073488.3-201ENST00000631611 778 ntBASIC5.64□□□□□ -1.51
SDC1P18827 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC5.64□□□□□ -1.51
SDC1P18827 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SDC1P18827 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC5.64□□□□□ -1.51
SDC1P18827 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
SDC1P18827 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
SDC1P18827 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SDC1P18827 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
SDC1P18827 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.64□□□□□ -1.51
SDC1P18827 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms