Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC097460.3-201ENST00000623099 442 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AL359715.5-201ENST00000623431 443 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 OR10R2-203ENST00000641400 975 ntAPPRIS ALT2 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 PYHIN1-204ENST00000392252 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 CCAT2-201ENST00000630920 1752 ntBASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AMZ2-206ENST00000577985 2257 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 SLC26A7-202ENST00000309536 2656 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 AC020571.1-202ENST00000433933 1413 ntTSL 1 (best) BASIC7.78□□□□□ -1.16
CCDC39Q9UFE4 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC7.77□□□□□ -1.16
CCDC39Q9UFE4 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 CDH19-203ENST00000540086 1963 ntTSL 2 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC067942.1-201ENST00000488045 1493 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 IMMTP1-201ENST00000435590 2219 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 RAET1L-201ENST00000286380 802 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 FAM107B-203ENST00000378462 692 ntAPPRIS P1 TSL 3 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 TRAV22-201ENST00000390450 464 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 OR2H1-204ENST00000396792 1294 ntAPPRIS P1 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AMZ2P2-201ENST00000406819 1057 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 RN7SKP188-201ENST00000410789 317 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 MFSD13B-201ENST00000420133 1290 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 E2F6P1-201ENST00000428850 745 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 CENPN-204ENST00000428963 971 ntTSL 2 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 MIR181A1HG-202ENST00000432296 930 ntTSL 3 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 UBE2D3P1-201ENST00000436669 444 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 E2F6P3-201ENST00000441743 743 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 BX005266.3-201ENST00000443013 1075 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 MIR4422HG-201ENST00000451250 638 ntTSL 3 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC005517.1-201ENST00000452091 489 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 NPM1P13-201ENST00000452663 865 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC073387.1-201ENST00000453261 709 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 NAA50-206ENST00000493454 964 ntTSL 2 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC108103.1-201ENST00000511286 446 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC092435.1-202ENST00000512752 518 ntTSL 3 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC117532.1-201ENST00000514638 323 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 RN7SKP11-201ENST00000517018 287 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 IGLC4-201ENST00000517690 248 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC027117.1-201ENST00000520646 667 ntTSL 5 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 VDAC3-206ENST00000521158 949 ntAPPRIS ALT1 TSL 5 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AP001646.2-201ENST00000528645 1156 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 LRRC6P1-201ENST00000532188 885 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 PDCL3P1-201ENST00000534575 734 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC084824.1-201ENST00000550917 1005 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC138811.2-201ENST00000567078 764 ntAPPRIS P1 TSL 3 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 ZNF431-206ENST00000599296 586 ntTSL 5 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AP003973.1-201ENST00000604639 691 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC112503.1-201ENST00000608436 391 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AL096803.3-201ENST00000609032 532 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC105105.5-201ENST00000622635 1294 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC004836.1-201ENST00000623032 634 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC022140.2-201ENST00000623500 188 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 MIR665-201ENST00000635949 72 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 MIPEPP2-201ENST00000422560 1819 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AF064860.2-201ENST00000457325 1542 ntTSL 3 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC102941.1-201ENST00000567616 1537 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 TPMT-201ENST00000309983 3181 ntAPPRIS P1 TSL 1 (best) BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 AC015969.1-201ENST00000366218 1416 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 KYNUP2-201ENST00000582280 1329 ntBASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 ECHDC1-210ENST00000454859 2341 ntAPPRIS P3 TSL 1 (best) BASIC7.77□□□□□ -1.17
CCDC39Q9UFE4 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 SLC22A25-201ENST00000306494 1692 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 ADGRE1-203ENST00000381404 3056 ntTSL 2 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 OR4M1-201ENST00000315957 1116 ntAPPRIS P1 BASIC7.76□□□□□ -1.17
CCDC39Q9UFE4 S100B-203ENST00000397648 839 ntAPPRIS P1 TSL 1 (best) BASIC7.76□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms