Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC8.96□□□□□ -0.97
SCAPERQ9BY12 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC8.96□□□□□ -0.97
SCAPERQ9BY12 AL157831.2-201ENST00000564681 3095 ntBASIC8.96□□□□□ -0.97
SCAPERQ9BY12 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC8.96□□□□□ -0.97
SCAPERQ9BY12 OR2T12-202ENST00000641276 5708 ntAPPRIS P1 BASIC8.96□□□□□ -0.97
SCAPERQ9BY12 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC8.96□□□□□ -0.98
SCAPERQ9BY12 AC123769.2-201ENST00000624332 5984 ntBASIC8.96□□□□□ -0.98
SCAPERQ9BY12 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
SCAPERQ9BY12 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
SCAPERQ9BY12 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC8.96□□□□□ -0.98
SCAPERQ9BY12 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC8.96□□□□□ -0.98
SCAPERQ9BY12 GDA-209ENST00000545168 5362 ntTSL 2 BASIC8.96□□□□□ -0.98
SCAPERQ9BY12 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC8.96□□□□□ -0.98
SCAPERQ9BY12 AL133270.1-201ENST00000402635 279 ntBASIC8.96□□□□□ -0.98
SCAPERQ9BY12 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC8.96□□□□□ -0.98
SCAPERQ9BY12 AC113412.1-201ENST00000425840 504 ntBASIC8.96□□□□□ -0.98
SCAPERQ9BY12 AC097721.1-201ENST00000427150 1253 ntBASIC8.96□□□□□ -0.98
SCAPERQ9BY12 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC8.96□□□□□ -0.98
SCAPERQ9BY12 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC8.96□□□□□ -0.98
SCAPERQ9BY12 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC8.96□□□□□ -0.98
SCAPERQ9BY12 AL157777.1-201ENST00000468100 304 ntBASIC8.96□□□□□ -0.98
SCAPERQ9BY12 RN7SL583P-201ENST00000475692 287 ntBASIC8.96□□□□□ -0.98
SCAPERQ9BY12 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC8.96□□□□□ -0.98
SCAPERQ9BY12 CDH12P4-201ENST00000517835 295 ntBASIC8.96□□□□□ -0.98
SCAPERQ9BY12 CDH12P3-201ENST00000517935 295 ntBASIC8.96□□□□□ -0.98
SCAPERQ9BY12 CDH12P1-201ENST00000518435 295 ntBASIC8.96□□□□□ -0.98
SCAPERQ9BY12 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC8.96□□□□□ -0.98
SCAPERQ9BY12 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC8.96□□□□□ -0.98
SCAPERQ9BY12 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC8.96□□□□□ -0.98
SCAPERQ9BY12 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 ALB-209ENST00000503124 1741 ntTSL 5 BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 AC013488.1-201ENST00000526618 1838 ntBASIC8.95□□□□□ -0.98
SCAPERQ9BY12 ZNF253-201ENST00000355650 2268 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 GRIA2-204ENST00000393815 5260 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 KCNA2-208ENST00000638616 3279 ntAPPRIS P1 TSL 5 BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 CSNK2A1-204ENST00000400227 1499 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 SPOCK1-201ENST00000282223 4488 ntTSL 5 BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 RN7SKP115-201ENST00000363177 317 ntBASIC8.95□□□□□ -0.98
SCAPERQ9BY12 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 OR7E116P-201ENST00000448529 957 ntBASIC8.95□□□□□ -0.98
SCAPERQ9BY12 RN7SL172P-201ENST00000460535 303 ntBASIC8.95□□□□□ -0.98
SCAPERQ9BY12 AL355032.1-201ENST00000472981 438 ntBASIC8.95□□□□□ -0.98
SCAPERQ9BY12 RN7SL222P-201ENST00000476452 299 ntBASIC8.95□□□□□ -0.98
SCAPERQ9BY12 AC004453.1-201ENST00000487895 408 ntBASIC8.95□□□□□ -0.98
SCAPERQ9BY12 RN7SKP98-201ENST00000517070 156 ntBASIC8.95□□□□□ -0.98
SCAPERQ9BY12 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 FGFR2-218ENST00000478859 3990 ntTSL 1 (best) BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC8.95□□□□□ -0.98
SCAPERQ9BY12 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC8.94□□□□□ -0.98
SCAPERQ9BY12 MRE11P1-201ENST00000464884 2127 ntBASIC8.94□□□□□ -0.98
SCAPERQ9BY12 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC8.94□□□□□ -0.98
SCAPERQ9BY12 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC8.94□□□□□ -0.98
SCAPERQ9BY12 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC8.94□□□□□ -0.98
SCAPERQ9BY12 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC8.94□□□□□ -0.98
SCAPERQ9BY12 AL731556.1-201ENST00000394628 3711 ntBASIC8.94□□□□□ -0.98
SCAPERQ9BY12 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC8.94□□□□□ -0.98
SCAPERQ9BY12 SGK3-201ENST00000345714 4055 ntAPPRIS P1 TSL 1 (best) BASIC8.94□□□□□ -0.98
SCAPERQ9BY12 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC8.94□□□□□ -0.98
SCAPERQ9BY12 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC8.94□□□□□ -0.98
SCAPERQ9BY12 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC8.94□□□□□ -0.98
SCAPERQ9BY12 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC8.94□□□□□ -0.98
SCAPERQ9BY12 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC8.94□□□□□ -0.98
SCAPERQ9BY12 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC8.94□□□□□ -0.98
SCAPERQ9BY12 AC005042.1-201ENST00000393397 800 ntBASIC8.94□□□□□ -0.98
SCAPERQ9BY12 GABARAPL3-201ENST00000412799 354 ntBASIC8.94□□□□□ -0.98
SCAPERQ9BY12 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC8.94□□□□□ -0.98
SCAPERQ9BY12 CUBNP2-201ENST00000443534 1139 ntBASIC8.94□□□□□ -0.98
SCAPERQ9BY12 RPL23AP60-201ENST00000450011 454 ntBASIC8.94□□□□□ -0.98
SCAPERQ9BY12 AC115223.1-201ENST00000466377 870 ntBASIC8.94□□□□□ -0.98
SCAPERQ9BY12 RPS3AP15-201ENST00000483874 781 ntBASIC8.94□□□□□ -0.98
SCAPERQ9BY12 AC110716.1-201ENST00000506934 607 ntTSL 2 BASIC8.94□□□□□ -0.98
SCAPERQ9BY12 HMGN2P6-201ENST00000551091 273 ntBASIC8.94□□□□□ -0.98
SCAPERQ9BY12 TXNP4-201ENST00000575018 310 ntBASIC8.94□□□□□ -0.98
SCAPERQ9BY12 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC8.94□□□□□ -0.98
SCAPERQ9BY12 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC8.94□□□□□ -0.98
SCAPERQ9BY12 AL139099.4-201ENST00000614802 114 ntBASIC8.94□□□□□ -0.98
SCAPERQ9BY12 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC8.94□□□□□ -0.98
SCAPERQ9BY12 AC136428.4-201ENST00000634254 1155 ntBASIC8.94□□□□□ -0.98
SCAPERQ9BY12 AC022726.2-201ENST00000634673 547 ntBASIC8.94□□□□□ -0.98
SCAPERQ9BY12 AC092111.1-201ENST00000618256 3358 ntBASIC8.94□□□□□ -0.98
SCAPERQ9BY12 UGT2B27P-201ENST00000505092 1620 ntBASIC8.94□□□□□ -0.98
SCAPERQ9BY12 PCDH15-231ENST00000617271 6425 ntAPPRIS P3 TSL 5 BASIC8.94□□□□□ -0.98
SCAPERQ9BY12 CD109-201ENST00000287097 9130 ntAPPRIS P3 TSL 1 (best) BASIC8.94□□□□□ -0.98
SCAPERQ9BY12 EEF1A1P14-201ENST00000421195 1376 ntBASIC8.94□□□□□ -0.98
SCAPERQ9BY12 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC8.94□□□□□ -0.98
SCAPERQ9BY12 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC8.93□□□□□ -0.98
SCAPERQ9BY12 AC114786.1-201ENST00000512892 1415 ntBASIC8.93□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms