Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 MELK-211ENST00000545008 2236 ntTSL 2 BASIC8.29□□□□□ -1.08
HLA-CQ95604 RAD21L1-203ENST00000409241 1808 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
HLA-CQ95604 COL28A1-201ENST00000399429 4277 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
HLA-CQ95604 EEF1A1P28-201ENST00000450915 1403 ntBASIC8.29□□□□□ -1.08
HLA-CQ95604 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC8.29□□□□□ -1.08
HLA-CQ95604 C6orf89-204ENST00000480824 6861 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
HLA-CQ95604 SH3BP5-AS1-202ENST00000420195 5570 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
HLA-CQ95604 MAPK10-233ENST00000515650 2394 ntTSL 5 BASIC8.28□□□□□ -1.08
HLA-CQ95604 ADGRE3-202ENST00000344373 2267 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
HLA-CQ95604 FKBP14-201ENST00000222803 4960 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
HLA-CQ95604 MTMR2-204ENST00000409459 3420 ntTSL 5 BASIC8.28□□□□□ -1.08
HLA-CQ95604 GCSAML-211ENST00000623578 3959 ntAPPRIS ALT2 TSL 4 BASIC8.28□□□□□ -1.08
HLA-CQ95604 LINC02511-201ENST00000505736 1668 ntTSL 5 BASIC8.28□□□□□ -1.08
HLA-CQ95604 C11orf57-201ENST00000280352 3693 ntAPPRIS ALT1 TSL 2 BASIC8.28□□□□□ -1.08
HLA-CQ95604 AC245060.6-201ENST00000624350 8420 ntBASIC8.28□□□□□ -1.08
HLA-CQ95604 WASF5P-205ENST00000428639 1455 ntBASIC8.28□□□□□ -1.08
HLA-CQ95604 SLC11A2-212ENST00000547688 2401 ntAPPRIS ALT2 TSL 5 BASIC8.28□□□□□ -1.08
HLA-CQ95604 TMPRSS4-AS1-204ENST00000636151 3397 ntAPPRIS P1 TSL 5 BASIC8.28□□□□□ -1.08
HLA-CQ95604 ACLY-202ENST00000353196 4318 ntAPPRIS ALT1 TSL 5 BASIC8.28□□□□□ -1.08
HLA-CQ95604 OR5M2P-202ENST00000641241 4242 ntBASIC8.28□□□□□ -1.08
HLA-CQ95604 AC023818.2-201ENST00000623817 2304 ntBASIC8.28□□□□□ -1.08
HLA-CQ95604 ZMYND8-219ENST00000611941 5090 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
HLA-CQ95604 SYNJ1-206ENST00000433931 4852 ntAPPRIS P4 TSL 1 (best) BASIC8.28□□□□□ -1.08
HLA-CQ95604 ACSL1-211ENST00000515030 3948 ntAPPRIS P3 TSL 5 BASIC8.28□□□□□ -1.08
HLA-CQ95604 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
HLA-CQ95604 SNORA51.2-201ENST00000364595 132 ntBASIC8.28□□□□□ -1.08
HLA-CQ95604 FAM107B-204ENST00000378465 1052 ntAPPRIS P1 TSL 2 BASIC8.28□□□□□ -1.08
HLA-CQ95604 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC8.28□□□□□ -1.08
HLA-CQ95604 AC068533.2-201ENST00000411872 306 ntBASIC8.28□□□□□ -1.08
HLA-CQ95604 AC013404.1-201ENST00000413068 249 ntBASIC8.28□□□□□ -1.08
HLA-CQ95604 AC068535.1-201ENST00000416008 471 ntTSL 3 BASIC8.28□□□□□ -1.08
HLA-CQ95604 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC8.28□□□□□ -1.08
HLA-CQ95604 USP9YP12-201ENST00000450481 570 ntBASIC8.28□□□□□ -1.08
HLA-CQ95604 RPL7AP52-201ENST00000458096 790 ntBASIC8.28□□□□□ -1.08
HLA-CQ95604 ABRACL-202ENST00000461027 456 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
HLA-CQ95604 RN7SL335P-201ENST00000482790 304 ntBASIC8.28□□□□□ -1.08
HLA-CQ95604 SMIM20-202ENST00000514384 774 ntTSL 5 BASIC8.28□□□□□ -1.08
HLA-CQ95604 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC8.28□□□□□ -1.08
HLA-CQ95604 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC8.28□□□□□ -1.08
HLA-CQ95604 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC8.28□□□□□ -1.08
HLA-CQ95604 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC8.28□□□□□ -1.08
HLA-CQ95604 MRPL40P1-201ENST00000542687 604 ntBASIC8.28□□□□□ -1.08
HLA-CQ95604 AC116903.1-201ENST00000557683 539 ntTSL 4 BASIC8.28□□□□□ -1.08
HLA-CQ95604 AC127029.1-201ENST00000560822 237 ntBASIC8.28□□□□□ -1.08
HLA-CQ95604 DNM1P31-201ENST00000564149 696 ntBASIC8.28□□□□□ -1.08
HLA-CQ95604 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC8.28□□□□□ -1.08
HLA-CQ95604 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC8.28□□□□□ -1.08
HLA-CQ95604 AC025678.1-201ENST00000567861 338 ntBASIC8.28□□□□□ -1.08
HLA-CQ95604 AC003009.1-201ENST00000571611 686 ntTSL 3 BASIC8.28□□□□□ -1.08
HLA-CQ95604 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC8.28□□□□□ -1.08
HLA-CQ95604 AC106900.2-201ENST00000604994 317 ntBASIC8.28□□□□□ -1.08
HLA-CQ95604 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC8.28□□□□□ -1.08
HLA-CQ95604 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
HLA-CQ95604 AC008121.3-201ENST00000618726 433 ntBASIC8.28□□□□□ -1.08
HLA-CQ95604 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
HLA-CQ95604 DDX53-201ENST00000327968 3629 ntAPPRIS P1 BASIC8.28□□□□□ -1.08
HLA-CQ95604 KIF1B-201ENST00000263934 6816 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
HLA-CQ95604 AC002480.4-201ENST00000414116 2592 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
HLA-CQ95604 ARMCX5-GPRASP2-206ENST00000476910 1848 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
HLA-CQ95604 WDR11-201ENST00000263461 4732 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
HLA-CQ95604 PTPN3-204ENST00000446349 8630 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
HLA-CQ95604 LINC02026-201ENST00000397645 1615 ntTSL 2 BASIC8.28□□□□□ -1.08
HLA-CQ95604 CEP57-207ENST00000537677 1647 ntAPPRIS ALT2 TSL 5 BASIC8.28□□□□□ -1.08
HLA-CQ95604 OR4K17-202ENST00000641386 4886 ntAPPRIS P1 BASIC8.28□□□□□ -1.08
HLA-CQ95604 KIAA0319-206ENST00000616673 5315 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
HLA-CQ95604 FRMPD2-201ENST00000305531 4665 ntAPPRIS ALT2 TSL 5 BASIC8.28□□□□□ -1.08
HLA-CQ95604 SMARCD1-205ENST00000548573 2095 ntTSL 5 BASIC8.28□□□□□ -1.08
HLA-CQ95604 ADGRG1-203ENST00000540164 3820 ntAPPRIS ALT1 TSL 1 (best) BASIC8.28□□□□□ -1.08
HLA-CQ95604 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
HLA-CQ95604 PTPRB-209ENST00000550857 5839 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
HLA-CQ95604 STXBP5-204ENST00000367481 9177 ntAPPRIS P3 TSL 1 (best) BASIC8.28□□□□□ -1.08
HLA-CQ95604 SECISBP2L-201ENST00000261847 6779 ntAPPRIS P3 TSL 1 (best) BASIC8.27□□□□□ -1.08
HLA-CQ95604 IL18R1-201ENST00000233957 3661 ntAPPRIS P1 TSL 5 BASIC8.27□□□□□ -1.08
HLA-CQ95604 ABCB4-206ENST00000453593 3699 ntTSL 5 BASIC8.27□□□□□ -1.08
HLA-CQ95604 RRP8-201ENST00000254605 6560 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.08
HLA-CQ95604 TCF4-224ENST00000564403 2696 ntAPPRIS ALT1 TSL 5 BASIC8.27□□□□□ -1.08
HLA-CQ95604 SH3GLB1-205ENST00000616170 6456 ntTSL 1 (best) BASIC8.27□□□□□ -1.08
HLA-CQ95604 LRFN5-203ENST00000554120 2121 ntAPPRIS ALT2 TSL 5 BASIC8.27□□□□□ -1.08
HLA-CQ95604 CD164-203ENST00000324953 2936 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
HLA-CQ95604 MAPK8-201ENST00000360332 5438 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
HLA-CQ95604 SYNPR-204ENST00000460711 2383 ntTSL 2 BASIC8.27□□□□□ -1.09
HLA-CQ95604 SGMS2-202ENST00000394684 6149 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
HLA-CQ95604 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
HLA-CQ95604 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC8.27□□□□□ -1.09
HLA-CQ95604 NCAPD2P1-201ENST00000432906 1801 ntBASIC8.27□□□□□ -1.09
HLA-CQ95604 ZNF844-201ENST00000439326 6620 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
HLA-CQ95604 AC138915.3-201ENST00000562908 1389 ntBASIC8.27□□□□□ -1.09
HLA-CQ95604 SEZ6L-204ENST00000402979 3306 ntAPPRIS ALT2 TSL 1 (best) BASIC8.27□□□□□ -1.09
HLA-CQ95604 AKAP4-202ENST00000376064 2864 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
HLA-CQ95604 REG1CP-205ENST00000444841 1710 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
HLA-CQ95604 CUL4B-201ENST00000336592 3109 ntTSL 5 BASIC8.27□□□□□ -1.09
HLA-CQ95604 PAGE2-201ENST00000374965 456 ntTSL 2 BASIC8.27□□□□□ -1.09
HLA-CQ95604 RNU6-1263P-201ENST00000384601 106 ntBASIC8.27□□□□□ -1.09
HLA-CQ95604 SNRPEP2-201ENST00000397592 279 ntBASIC8.27□□□□□ -1.09
HLA-CQ95604 NACAP7-201ENST00000407371 609 ntBASIC8.27□□□□□ -1.09
HLA-CQ95604 RSU1P3-201ENST00000412878 835 ntBASIC8.27□□□□□ -1.09
HLA-CQ95604 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC8.27□□□□□ -1.09
HLA-CQ95604 RBMY2GP-201ENST00000418671 1034 ntBASIC8.27□□□□□ -1.09
HLA-CQ95604 AC064875.1-203ENST00000422996 582 ntTSL 4 BASIC8.27□□□□□ -1.09
HLA-CQ95604 RBMY2NP-201ENST00000434454 1028 ntBASIC8.27□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms