Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 AC138761.5-201ENST00000433967 325 ntBASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 AC073072.2-201ENST00000447425 348 ntBASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 RSU1P1-201ENST00000453416 441 ntBASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 RN7SL168P-201ENST00000463821 279 ntBASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 RN7SL83P-201ENST00000468131 297 ntBASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 RN7SL326P-201ENST00000477493 296 ntBASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 RN7SL70P-201ENST00000478322 302 ntBASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 DEFB109A-201ENST00000482450 265 ntBASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 AL117692.1-201ENST00000494283 713 ntBASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 AC109454.2-201ENST00000503470 520 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 AC022915.3-201ENST00000518620 594 ntTSL 4 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 LDHC-203ENST00000535809 757 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 AC012175.1-201ENST00000603755 531 ntBASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 Metazoa_SRP.38-201ENST00000615981 254 ntBASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 C11orf1-203ENST00000529270 1437 ntTSL 2 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 AL139039.3-201ENST00000413129 1475 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 GKN2-202ENST00000481498 1498 ntTSL 2 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 LINC02352-202ENST00000559292 1450 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 AC217777.1-201ENST00000570034 1471 ntBASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 KCTD4-201ENST00000379108 1865 ntAPPRIS P1 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 AC009962.1-201ENST00000567327 3813 ntBASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 AL022311.1-201ENST00000623726 19416 ntBASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
CCDC112Q8NEF3 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 LIPF-201ENST00000238983 1376 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 RNU1-5P-201ENST00000362684 144 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 RN7SKP81-201ENST00000365603 331 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 GNAT3-201ENST00000398291 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 RPL12P23-201ENST00000405880 490 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 CAP1P2-201ENST00000417455 1409 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 CDC42P6-201ENST00000421246 576 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 AC140479.2-201ENST00000421567 3130 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 TRBV29OR9-2-201ENST00000427589 333 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 VN1R53P-201ENST00000429536 957 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 PCNPP2-201ENST00000441651 455 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 AC245291.3-201ENST00000443400 292 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 RN7SL369P-201ENST00000477138 299 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 LINC02025-201ENST00000488348 360 ntTSL 3 BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 THAP12P9-201ENST00000503971 2360 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 SNX18P24-201ENST00000505249 671 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 BCAS2P1-201ENST00000528022 632 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 AP003033.2-201ENST00000528901 805 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 AC123567.2-202ENST00000550759 446 ntTSL 3 BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 AL163952.1-202ENST00000569625 600 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 MIR3157-201ENST00000578688 85 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 MIR212-201ENST00000586026 110 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 AL022394.1-201ENST00000606979 292 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 SNORA74.4-201ENST00000607595 199 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 AC010998.3-201ENST00000613871 631 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 PRL-202ENST00000615510 1268 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 INTS12-211ENST00000618810 1502 ntAPPRIS P1 TSL 5 BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 AC063952.1-203ENST00000634410 658 ntBASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
CCDC112Q8NEF3 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms