Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 AL139415.1-201ENST00000424862 352 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 AC068287.1-201ENST00000430283 295 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 RPL23AP60-201ENST00000450011 454 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC4.05□□□□□ -1.76
PRKDCP78527 FTH1P8-201ENST00000498161 514 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 RN7SKP147-201ENST00000517154 244 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.05□□□□□ -1.76
PRKDCP78527 RN7SL690P-201ENST00000582087 240 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 uc_338.26-201ENST00000612659 160 ntBASIC4.05□□□□□ -1.76
PRKDCP78527 TSC22D2-201ENST00000361875 11154 ntAPPRIS P2 TSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 DROSHA-202ENST00000442743 4991 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
PRKDCP78527 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC4.05□□□□□ -1.76
PRKDCP78527 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC4.05□□□□□ -1.76
PRKDCP78527 COL4A6-210ENST00000621266 6627 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
PRKDCP78527 TTL-201ENST00000233336 14269 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC4.04□□□□□ -1.76
PRKDCP78527 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC4.04□□□□□ -1.76
PRKDCP78527 ZNF733P-202ENST00000444809 1573 ntBASIC4.04□□□□□ -1.76
PRKDCP78527 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC4.04□□□□□ -1.76
PRKDCP78527 TAOK1-201ENST00000261716 12407 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 RNA5SP478-201ENST00000364657 115 ntBASIC4.04□□□□□ -1.76
PRKDCP78527 MIR130A-201ENST00000385274 89 ntBASIC4.04□□□□□ -1.76
PRKDCP78527 AL513329.1-201ENST00000426575 657 ntTSL 3 BASIC4.04□□□□□ -1.76
PRKDCP78527 Z92846.1-201ENST00000456203 268 ntBASIC4.04□□□□□ -1.76
PRKDCP78527 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC4.04□□□□□ -1.76
PRKDCP78527 WWOX-217ENST00000620008 450 ntTSL 2 BASIC4.04□□□□□ -1.76
PRKDCP78527 BEND3-201ENST00000369042 6200 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
PRKDCP78527 ORC3-206ENST00000546266 2470 ntTSL 2 BASIC4.04□□□□□ -1.76
PRKDCP78527 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC4.04□□□□□ -1.76
PRKDCP78527 RGS4-203ENST00000367909 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 CNTN4-202ENST00000397461 5198 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
PRKDCP78527 CACNB2-216ENST00000617363 4385 ntTSL 5 BASIC4.04□□□□□ -1.76
PRKDCP78527 CACNB4-254ENST00000637514 1880 ntTSL 5 BASIC4.04□□□□□ -1.76
PRKDCP78527 SHROOM3-201ENST00000296043 11020 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 CCNT2-202ENST00000295238 4491 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 OR8B9P-202ENST00000642028 5216 ntBASIC4.04□□□□□ -1.76
PRKDCP78527 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 VWDE-206ENST00000614403 4701 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 PKP4-202ENST00000389759 4443 ntAPPRIS P4 TSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 ZNF791-202ENST00000446165 6412 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
PRKDCP78527 AC069213.2-201ENST00000420238 366 ntBASIC4.04□□□□□ -1.76
PRKDCP78527 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC4.04□□□□□ -1.76
PRKDCP78527 RPL34P20-201ENST00000442771 351 ntBASIC4.04□□□□□ -1.76
PRKDCP78527 AC095057.1-201ENST00000507583 168 ntBASIC4.04□□□□□ -1.76
PRKDCP78527 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.04□□□□□ -1.76
PRKDCP78527 UBE2FP2-201ENST00000566646 462 ntBASIC4.04□□□□□ -1.76
PRKDCP78527 AL391358.1-201ENST00000605342 190 ntBASIC4.04□□□□□ -1.76
PRKDCP78527 AL445423.1-201ENST00000609941 536 ntBASIC4.04□□□□□ -1.76
PRKDCP78527 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 ATP2B1-204ENST00000428670 7032 ntAPPRIS P1 TSL 5 BASIC4.04□□□□□ -1.76
PRKDCP78527 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC4.04□□□□□ -1.76
PRKDCP78527 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
PRKDCP78527 CMC2-201ENST00000219400 10301 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 CD2-202ENST00000369478 1609 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 KIAA0556-201ENST00000261588 6616 ntAPPRIS P2 TSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 CASC19-205ENST00000641013 1411 ntBASIC4.04□□□□□ -1.76
PRKDCP78527 AKAP13-201ENST00000361243 9468 ntAPPRIS P4 TSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 AC098850.4-201ENST00000448331 8802 ntAPPRIS P1 TSL 2 BASIC4.04□□□□□ -1.76
PRKDCP78527 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
PRKDCP78527 PECAM1-203ENST00000563924 6831 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC4.04□□□□□ -1.76
PRKDCP78527 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC4.04□□□□□ -1.76
PRKDCP78527 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC4.04□□□□□ -1.76
PRKDCP78527 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC4.04□□□□□ -1.76
PRKDCP78527 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC4.04□□□□□ -1.76
PRKDCP78527 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC4.04□□□□□ -1.76
PRKDCP78527 TMOD3-201ENST00000308580 8255 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 ANKRD26-202ENST00000436985 6827 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 STAMBPL1-201ENST00000371922 1899 ntTSL 2 BASIC4.04□□□□□ -1.76
PRKDCP78527 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
PRKDCP78527 MYO7B-202ENST00000409816 6694 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PRKDCP78527 SNRPD1-201ENST00000300413 4909 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PRKDCP78527 CSNK1A1-204ENST00000504676 1772 ntTSL 2 BASIC4.03□□□□□ -1.76
PRKDCP78527 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
PRKDCP78527 EYA4-203ENST00000367895 5699 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
PRKDCP78527 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC4.03□□□□□ -1.76
PRKDCP78527 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
PRKDCP78527 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC4.03□□□□□ -1.76
PRKDCP78527 AC092106.1-201ENST00000444291 373 ntBASIC4.03□□□□□ -1.76
PRKDCP78527 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC4.03□□□□□ -1.76
PRKDCP78527 EIF2S2P2-201ENST00000447161 982 ntBASIC4.03□□□□□ -1.76
PRKDCP78527 AC105399.1-202ENST00000447303 205 ntBASIC4.03□□□□□ -1.76
PRKDCP78527 AURKAPS2-201ENST00000454983 333 ntBASIC4.03□□□□□ -1.76
PRKDCP78527 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
PRKDCP78527 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.03□□□□□ -1.76
PRKDCP78527 PTPN4-201ENST00000263708 10300 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PRKDCP78527 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PRKDCP78527 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
PRKDCP78527 CDH6-201ENST00000265071 8476 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
PRKDCP78527 KPNB1-201ENST00000290158 6139 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
PRKDCP78527 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.03□□□□□ -1.76
PRKDCP78527 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC4.03□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms