Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
FOXA3P55318 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC4.44□□□□□ -1.7
FOXA3P55318 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC4.44□□□□□ -1.7
FOXA3P55318 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
FOXA3P55318 OR5M2P-202ENST00000641241 4242 ntBASIC4.44□□□□□ -1.7
FOXA3P55318 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
FOXA3P55318 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC4.44□□□□□ -1.7
FOXA3P55318 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
FOXA3P55318 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA3P55318 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.43□□□□□ -1.7
FOXA3P55318 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC4.43□□□□□ -1.7
FOXA3P55318 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA3P55318 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA3P55318 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.43□□□□□ -1.7
FOXA3P55318 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA3P55318 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC4.43□□□□□ -1.7
FOXA3P55318 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA3P55318 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA3P55318 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
FOXA3P55318 RN7SKP145-201ENST00000363291 303 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 RN7SKP191-201ENST00000364713 306 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 SNORA70.6-201ENST00000383934 134 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 ASPH-204ENST00000389204 1290 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA3P55318 EEF1GP6-201ENST00000402309 905 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC4.43□□□□□ -1.7
FOXA3P55318 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC4.43□□□□□ -1.7
FOXA3P55318 RPS15AP30-201ENST00000420976 390 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 AL589794.1-201ENST00000424971 390 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC4.43□□□□□ -1.7
FOXA3P55318 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC4.43□□□□□ -1.7
FOXA3P55318 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC4.43□□□□□ -1.7
FOXA3P55318 AL022157.1-201ENST00000439622 665 ntTSL 2 BASIC4.43□□□□□ -1.7
FOXA3P55318 LRTOMT-209ENST00000440313 253 ntTSL 3 BASIC4.43□□□□□ -1.7
FOXA3P55318 AL663074.2-201ENST00000440621 479 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC4.43□□□□□ -1.7
FOXA3P55318 AL512593.1-201ENST00000444758 779 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 MAGI2-AS3-210ENST00000448636 798 ntTSL 5 BASIC4.43□□□□□ -1.7
FOXA3P55318 SDC4P-201ENST00000453285 601 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 CBX1P2-201ENST00000453841 458 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 RN7SKP198-201ENST00000459286 306 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 PDPN-205ENST00000487038 607 ntTSL 2 BASIC4.43□□□□□ -1.7
FOXA3P55318 RPSAP51-201ENST00000497462 645 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 AC093870.1-201ENST00000506837 213 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 AC025188.1-201ENST00000507514 600 ntTSL 3 BASIC4.43□□□□□ -1.7
FOXA3P55318 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC4.43□□□□□ -1.7
FOXA3P55318 CFI-204ENST00000510800 667 ntTSL 2 BASIC4.43□□□□□ -1.7
FOXA3P55318 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC4.43□□□□□ -1.7
FOXA3P55318 GAPDHP62-201ENST00000515313 990 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 CSNK1A1-207ENST00000515768 1098 ntAPPRIS P4 TSL 5 BASIC4.43□□□□□ -1.7
FOXA3P55318 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC4.43□□□□□ -1.7
FOXA3P55318 AC027026.1-201ENST00000532323 742 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 AC092490.1-202ENST00000540299 809 ntTSL 3 BASIC4.43□□□□□ -1.7
FOXA3P55318 NELL2-211ENST00000548826 559 ntTSL 2 BASIC4.43□□□□□ -1.7
FOXA3P55318 LINC01146-203ENST00000555996 459 ntTSL 2 BASIC4.43□□□□□ -1.7
FOXA3P55318 DAAM1-208ENST00000556135 582 ntTSL 3 BASIC4.43□□□□□ -1.7
FOXA3P55318 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC4.43□□□□□ -1.7
FOXA3P55318 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC4.43□□□□□ -1.7
FOXA3P55318 AC091932.1-201ENST00000569381 427 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 AC068152.1-203ENST00000570314 254 ntTSL 3 BASIC4.43□□□□□ -1.7
FOXA3P55318 AC015674.1-201ENST00000578482 267 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 AC097467.3-210ENST00000597939 705 ntTSL 5 BASIC4.43□□□□□ -1.7
FOXA3P55318 AC018809.2-201ENST00000602436 3823 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 AC022106.1-201ENST00000612834 766 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC4.43□□□□□ -1.7
FOXA3P55318 MIR6133-201ENST00000617057 108 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 AC099654.11-201ENST00000638857 294 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 LRRC7-202ENST00000310961 6507 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
FOXA3P55318 PLEKHA5-202ENST00000424268 4391 ntTSL 2 BASIC4.43□□□□□ -1.7
FOXA3P55318 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA3P55318 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC4.43□□□□□ -1.7
FOXA3P55318 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC4.43□□□□□ -1.7
FOXA3P55318 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.43□□□□□ -1.7
FOXA3P55318 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
FOXA3P55318 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA3P55318 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA3P55318 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA3P55318 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC4.43□□□□□ -1.7
FOXA3P55318 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA3P55318 AC092376.2-201ENST00000622621 4116 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 LINC01990-201ENST00000609293 1487 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
FOXA3P55318 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC4.43□□□□□ -1.7
FOXA3P55318 AL133243.2-201ENST00000610331 1621 ntBASIC4.43□□□□□ -1.7
FOXA3P55318 AP005432.1-201ENST00000580891 3485 ntBASIC4.42□□□□□ -1.7
FOXA3P55318 RBM48-202ENST00000481551 4093 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
FOXA3P55318 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
FOXA3P55318 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
FOXA3P55318 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
FOXA3P55318 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
FOXA3P55318 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
FOXA3P55318 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC4.42□□□□□ -1.7
FOXA3P55318 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
FOXA3P55318 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
FOXA3P55318 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
FOXA3P55318 AC019178.1-201ENST00000392337 440 ntBASIC4.42□□□□□ -1.7
FOXA3P55318 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
FOXA3P55318 GPS2P1-201ENST00000411761 986 ntBASIC4.42□□□□□ -1.7
FOXA3P55318 NMD3P2-201ENST00000421815 761 ntBASIC4.42□□□□□ -1.7
FOXA3P55318 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC4.42□□□□□ -1.7
FOXA3P55318 AC073188.3-201ENST00000425228 339 ntTSL 2 BASIC4.42□□□□□ -1.7
FOXA3P55318 GYG1P2-201ENST00000426437 1006 ntBASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms