Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 CDH12P4-201ENST00000517835 295 ntBASIC7.59□□□□□ -1.19
COL18A1P39060 CDH12P3-201ENST00000517935 295 ntBASIC7.59□□□□□ -1.19
COL18A1P39060 CDH12P1-201ENST00000518435 295 ntBASIC7.59□□□□□ -1.19
COL18A1P39060 MRPS21P7-201ENST00000566937 238 ntBASIC7.59□□□□□ -1.19
COL18A1P39060 AC090510.2-201ENST00000617465 629 ntBASIC7.59□□□□□ -1.19
COL18A1P39060 AP002505.2-201ENST00000623585 696 ntBASIC7.59□□□□□ -1.19
COL18A1P39060 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC7.59□□□□□ -1.19
COL18A1P39060 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC7.59□□□□□ -1.19
COL18A1P39060 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
COL18A1P39060 AL121768.1-201ENST00000613917 2544 ntBASIC7.59□□□□□ -1.19
COL18A1P39060 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC7.59□□□□□ -1.19
COL18A1P39060 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC7.59□□□□□ -1.19
COL18A1P39060 UBE4B-202ENST00000343090 5267 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
COL18A1P39060 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
COL18A1P39060 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC7.59□□□□□ -1.2
COL18A1P39060 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC7.59□□□□□ -1.2
COL18A1P39060 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC7.59□□□□□ -1.2
COL18A1P39060 AC004453.1-201ENST00000487895 408 ntBASIC7.59□□□□□ -1.2
COL18A1P39060 AC072052.1-201ENST00000496556 306 ntBASIC7.59□□□□□ -1.2
COL18A1P39060 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC7.59□□□□□ -1.2
COL18A1P39060 AC130448.2-201ENST00000624082 374 ntBASIC7.59□□□□□ -1.2
COL18A1P39060 ZFX-204ENST00000379188 7513 ntTSL 5 BASIC7.58□□□□□ -1.2
COL18A1P39060 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC7.58□□□□□ -1.2
COL18A1P39060 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC7.58□□□□□ -1.2
COL18A1P39060 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC7.58□□□□□ -1.2
COL18A1P39060 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC7.58□□□□□ -1.2
COL18A1P39060 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL18A1P39060 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
COL18A1P39060 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC7.58□□□□□ -1.2
COL18A1P39060 DNAH11-202ENST00000409508 14167 ntAPPRIS P2 TSL 5 BASIC7.58□□□□□ -1.2
COL18A1P39060 MCFD2-202ENST00000409105 4210 ntAPPRIS P1 TSL 5 BASIC7.58□□□□□ -1.2
COL18A1P39060 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL18A1P39060 AC006213.6-201ENST00000623722 4179 ntBASIC7.58□□□□□ -1.2
COL18A1P39060 AC060780.1-202ENST00000590740 5084 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
COL18A1P39060 RUNDC3A-AS1-202ENST00000588097 5203 ntTSL 5 BASIC7.58□□□□□ -1.2
COL18A1P39060 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC7.58□□□□□ -1.2
COL18A1P39060 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL18A1P39060 AL512590.3-202ENST00000534123 6463 ntTSL 2 BASIC7.58□□□□□ -1.2
COL18A1P39060 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
COL18A1P39060 AC005294.1-201ENST00000355509 281 ntBASIC7.58□□□□□ -1.2
COL18A1P39060 SSX3-202ENST00000376893 800 ntTSL 2 BASIC7.58□□□□□ -1.2
COL18A1P39060 SNORA56-201ENST00000383966 129 ntBASIC7.58□□□□□ -1.2
COL18A1P39060 AL133270.1-201ENST00000402635 279 ntBASIC7.58□□□□□ -1.2
COL18A1P39060 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC7.58□□□□□ -1.2
COL18A1P39060 RMRPP5-201ENST00000411156 267 ntBASIC7.58□□□□□ -1.2
COL18A1P39060 LDHC-203ENST00000535809 757 ntTSL 5 BASIC7.58□□□□□ -1.2
COL18A1P39060 LDHC-205ENST00000537486 583 ntTSL 5 BASIC7.58□□□□□ -1.2
COL18A1P39060 NMNAT1P5-201ENST00000559657 841 ntBASIC7.58□□□□□ -1.2
COL18A1P39060 MIR4436B2-201ENST00000581415 91 ntBASIC7.58□□□□□ -1.2
COL18A1P39060 MIR4436B1-201ENST00000583272 91 ntBASIC7.58□□□□□ -1.2
COL18A1P39060 AP001784.1-201ENST00000624107 428 ntBASIC7.58□□□□□ -1.2
COL18A1P39060 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC7.58□□□□□ -1.2
COL18A1P39060 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
COL18A1P39060 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
COL18A1P39060 AGL-201ENST00000294724 7446 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
COL18A1P39060 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC7.58□□□□□ -1.2
COL18A1P39060 DOCK2-211ENST00000520908 4654 ntTSL 2 BASIC7.58□□□□□ -1.2
COL18A1P39060 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
COL18A1P39060 HEPH-209ENST00000519389 6013 ntAPPRIS P3 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL18A1P39060 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC7.57□□□□□ -1.2
COL18A1P39060 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL18A1P39060 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC7.57□□□□□ -1.2
COL18A1P39060 NRCAM-204ENST00000379028 6685 ntAPPRIS ALT2 TSL 5 BASIC7.57□□□□□ -1.2
COL18A1P39060 RPL23P2-201ENST00000320371 421 ntBASIC7.57□□□□□ -1.2
COL18A1P39060 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
COL18A1P39060 COL24A1-201ENST00000370571 6825 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL18A1P39060 AL590762.4-201ENST00000425885 253 ntBASIC7.57□□□□□ -1.2
COL18A1P39060 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC7.57□□□□□ -1.2
COL18A1P39060 IGLV2-34-201ENST00000490007 283 ntBASIC7.57□□□□□ -1.2
COL18A1P39060 LINC02492-201ENST00000502952 564 ntTSL 5 BASIC7.57□□□□□ -1.2
COL18A1P39060 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC7.57□□□□□ -1.2
COL18A1P39060 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC7.57□□□□□ -1.2
COL18A1P39060 AL049779.3-201ENST00000557141 606 ntBASIC7.57□□□□□ -1.2
COL18A1P39060 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC7.57□□□□□ -1.2
COL18A1P39060 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC7.57□□□□□ -1.2
COL18A1P39060 Metazoa_SRP.207-201ENST00000612254 285 ntBASIC7.57□□□□□ -1.2
COL18A1P39060 LINC01739-205ENST00000641890 573 ntBASIC7.57□□□□□ -1.2
COL18A1P39060 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL18A1P39060 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
COL18A1P39060 CCDC125-201ENST00000383374 2006 ntTSL 5 BASIC7.57□□□□□ -1.2
COL18A1P39060 SPTLC3-201ENST00000399002 6169 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
COL18A1P39060 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
COL18A1P39060 FABP12P1-201ENST00000401911 322 ntBASIC7.56□□□□□ -1.2
COL18A1P39060 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC7.56□□□□□ -1.2
COL18A1P39060 TMA16P2-201ENST00000413187 601 ntBASIC7.56□□□□□ -1.2
COL18A1P39060 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC7.56□□□□□ -1.2
COL18A1P39060 AC009784.1-201ENST00000426484 460 ntBASIC7.56□□□□□ -1.2
COL18A1P39060 RN7SL352P-201ENST00000466002 277 ntBASIC7.56□□□□□ -1.2
COL18A1P39060 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC7.56□□□□□ -1.2
COL18A1P39060 RPL7P6-201ENST00000480903 738 ntBASIC7.56□□□□□ -1.2
COL18A1P39060 AC079841.1-201ENST00000481228 950 ntBASIC7.56□□□□□ -1.2
COL18A1P39060 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC7.56□□□□□ -1.2
COL18A1P39060 AP000676.2-201ENST00000529711 301 ntBASIC7.56□□□□□ -1.2
COL18A1P39060 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC7.56□□□□□ -1.2
COL18A1P39060 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC7.56□□□□□ -1.2
COL18A1P39060 AC010245.2-201ENST00000606908 1167 ntBASIC7.56□□□□□ -1.2
COL18A1P39060 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
COL18A1P39060 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
COL18A1P39060 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC7.56□□□□□ -1.2
COL18A1P39060 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC7.56□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms