Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC7.05□□□□□ -1.28
SCN4AP35499 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC7.05□□□□□ -1.28
SCN4AP35499 HDAC1P2-201ENST00000453661 1398 ntBASIC7.05□□□□□ -1.28
SCN4AP35499 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SCN4AP35499 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC7.05□□□□□ -1.28
SCN4AP35499 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC7.05□□□□□ -1.28
SCN4AP35499 AFP-201ENST00000226359 1914 ntTSL 5 BASIC7.05□□□□□ -1.28
SCN4AP35499 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC7.05□□□□□ -1.28
SCN4AP35499 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
SCN4AP35499 CLCA3P-203ENST00000490028 2781 ntBASIC7.05□□□□□ -1.28
SCN4AP35499 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC7.05□□□□□ -1.28
SCN4AP35499 AC087516.1-201ENST00000561236 2428 ntBASIC7.05□□□□□ -1.28
SCN4AP35499 OR1M1-202ENST00000641627 2535 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
SCN4AP35499 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SCN4AP35499 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
SCN4AP35499 UGT2B27P-201ENST00000505092 1620 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
SCN4AP35499 AC105235.1-201ENST00000623208 1816 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 AP001541.1-201ENST00000623322 1904 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC7.04□□□□□ -1.28
SCN4AP35499 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC7.04□□□□□ -1.28
SCN4AP35499 RNA5SP478-201ENST00000364657 115 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 MIR141-201ENST00000384975 95 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 RNU11-6P-201ENST00000391127 133 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 RN7SKP213-201ENST00000410746 298 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 RN7SKP279-201ENST00000411383 298 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 FAR2P2-201ENST00000413041 594 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 AL807761.1-201ENST00000417622 171 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC7.04□□□□□ -1.28
SCN4AP35499 FAR2P4-202ENST00000425399 584 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC7.04□□□□□ -1.28
SCN4AP35499 FAR2P1-206ENST00000449736 709 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC7.04□□□□□ -1.28
SCN4AP35499 LINC00483-203ENST00000450727 686 ntTSL 3 BASIC7.04□□□□□ -1.28
SCN4AP35499 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC7.04□□□□□ -1.28
SCN4AP35499 RPL32P33-201ENST00000487023 394 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 AC023818.1-201ENST00000498379 384 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 AC105384.1-201ENST00000512405 835 ntTSL 3 BASIC7.04□□□□□ -1.28
SCN4AP35499 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC7.04□□□□□ -1.28
SCN4AP35499 MIR4646-201ENST00000580775 63 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 AC126915.2-201ENST00000610957 190 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC7.04□□□□□ -1.28
SCN4AP35499 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC7.04□□□□□ -1.28
SCN4AP35499 AL589993.1-201ENST00000407450 2524 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC7.04□□□□□ -1.28
SCN4AP35499 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
SCN4AP35499 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC7.04□□□□□ -1.28
SCN4AP35499 Z99129.3-201ENST00000624363 6430 ntTSL 2 BASIC7.04□□□□□ -1.28
SCN4AP35499 CACHD1-201ENST00000290039 5275 ntAPPRIS P1 TSL 5 BASIC7.04□□□□□ -1.28
SCN4AP35499 CCNT1-201ENST00000261900 6973 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SCN4AP35499 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SCN4AP35499 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC7.04□□□□□ -1.28
SCN4AP35499 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
SCN4AP35499 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
SCN4AP35499 ZNF718-201ENST00000510175 3495 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SCN4AP35499 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
SCN4AP35499 PAQR5-201ENST00000340965 4943 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SCN4AP35499 HP1BP3-201ENST00000312239 3938 ntAPPRIS P1 TSL 2 BASIC7.04□□□□□ -1.28
SCN4AP35499 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SCN4AP35499 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
SCN4AP35499 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
SCN4AP35499 TCF7L2-210ENST00000369397 3802 ntAPPRIS P3 TSL 1 (best) BASIC7.04□□□□□ -1.28
SCN4AP35499 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC7.04□□□□□ -1.28
SCN4AP35499 CEACAMP7-201ENST00000444105 496 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC7.04□□□□□ -1.28
SCN4AP35499 SDC4P-201ENST00000453285 601 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 HIGD1AP8-201ENST00000453927 274 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 OR51K1P-201ENST00000510214 950 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 AC138123.2-201ENST00000550324 579 ntTSL 3 BASIC7.04□□□□□ -1.28
SCN4AP35499 MIR4301-201ENST00000577203 66 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC7.04□□□□□ -1.28
SCN4AP35499 CSNK1A1-210ENST00000606719 835 ntTSL 2 BASIC7.04□□□□□ -1.28
SCN4AP35499 uc_338.26-201ENST00000612659 160 ntBASIC7.04□□□□□ -1.28
SCN4AP35499 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC7.04□□□□□ -1.28
SCN4AP35499 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
SCN4AP35499 SPOCK1-201ENST00000282223 4488 ntTSL 5 BASIC7.03□□□□□ -1.28
SCN4AP35499 DNM1L-203ENST00000381000 4397 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SCN4AP35499 AC068189.1-201ENST00000501164 2632 ntTSL 2 BASIC7.03□□□□□ -1.28
SCN4AP35499 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SCN4AP35499 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SCN4AP35499 FAM227A-205ENST00000535113 10322 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
SCN4AP35499 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC7.03□□□□□ -1.28
SCN4AP35499 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC7.03□□□□□ -1.28
SCN4AP35499 HOOK3-201ENST00000307602 14398 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SCN4AP35499 CPED1-201ENST00000310396 5340 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SCN4AP35499 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC7.03□□□□□ -1.28
SCN4AP35499 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SCN4AP35499 MEF2A-201ENST00000338042 5464 ntAPPRIS ALT1 TSL 2 BASIC7.03□□□□□ -1.28
SCN4AP35499 DPY19L2P2-203ENST00000435536 1858 ntBASIC7.03□□□□□ -1.28
SCN4AP35499 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC7.03□□□□□ -1.28
SCN4AP35499 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SCN4AP35499 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC7.03□□□□□ -1.28
SCN4AP35499 AC007842.1-201ENST00000597336 2039 ntBASIC7.03□□□□□ -1.28
SCN4AP35499 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
SCN4AP35499 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SCN4AP35499 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC7.03□□□□□ -1.28
SCN4AP35499 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SCN4AP35499 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
SCN4AP35499 AL645733.1-201ENST00000402250 217 ntBASIC7.03□□□□□ -1.28
SCN4AP35499 UBE2V1P14-201ENST00000415815 558 ntBASIC7.03□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms