Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC7.27□□□□□ -1.25
COL5A3P25940 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC7.27□□□□□ -1.25
COL5A3P25940 ARNT2-207ENST00000533983 6690 ntAPPRIS ALT1 TSL 5 BASIC7.27□□□□□ -1.25
COL5A3P25940 RNA5SP335-201ENST00000363817 110 ntBASIC7.27□□□□□ -1.25
COL5A3P25940 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL5A3P25940 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC7.27□□□□□ -1.25
COL5A3P25940 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC7.27□□□□□ -1.25
COL5A3P25940 MIR223-201ENST00000385204 110 ntBASIC7.27□□□□□ -1.25
COL5A3P25940 RPL23AP27-201ENST00000415161 451 ntBASIC7.27□□□□□ -1.25
COL5A3P25940 NIFKP3-201ENST00000417799 865 ntBASIC7.27□□□□□ -1.25
COL5A3P25940 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC7.27□□□□□ -1.25
COL5A3P25940 AC021678.3-201ENST00000517893 476 ntBASIC7.27□□□□□ -1.25
COL5A3P25940 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC7.27□□□□□ -1.25
COL5A3P25940 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC7.27□□□□□ -1.25
COL5A3P25940 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC7.27□□□□□ -1.25
COL5A3P25940 AC015720.2-201ENST00000567709 334 ntBASIC7.27□□□□□ -1.25
COL5A3P25940 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC7.27□□□□□ -1.25
COL5A3P25940 AC130448.2-201ENST00000624082 374 ntBASIC7.27□□□□□ -1.25
COL5A3P25940 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC7.27□□□□□ -1.25
COL5A3P25940 PTPRT-205ENST00000373193 12681 ntAPPRIS ALT2 TSL 1 (best) BASIC7.27□□□□□ -1.25
COL5A3P25940 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC7.26□□□□□ -1.25
COL5A3P25940 A2ML1-201ENST00000299698 5274 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL5A3P25940 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC7.26□□□□□ -1.25
COL5A3P25940 SRCAP-201ENST00000262518 11754 ntAPPRIS P1 TSL 2 BASIC7.26□□□□□ -1.25
COL5A3P25940 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC7.26□□□□□ -1.25
COL5A3P25940 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC7.26□□□□□ -1.25
COL5A3P25940 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
COL5A3P25940 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
COL5A3P25940 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC7.26□□□□□ -1.25
COL5A3P25940 DAZ3-202ENST00000382365 3503 ntAPPRIS P5 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL5A3P25940 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
COL5A3P25940 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC7.26□□□□□ -1.25
COL5A3P25940 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC7.26□□□□□ -1.25
COL5A3P25940 CAMK2D-202ENST00000342666 1940 ntTSL 5 BASIC7.26□□□□□ -1.25
COL5A3P25940 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC7.26□□□□□ -1.25
COL5A3P25940 MIR550A3-201ENST00000390735 95 ntBASIC7.26□□□□□ -1.25
COL5A3P25940 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC7.26□□□□□ -1.25
COL5A3P25940 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC7.26□□□□□ -1.25
COL5A3P25940 AC096775.1-201ENST00000437724 448 ntBASIC7.26□□□□□ -1.25
COL5A3P25940 AL450996.1-201ENST00000445574 1202 ntBASIC7.26□□□□□ -1.25
COL5A3P25940 EIF1P7-201ENST00000487533 337 ntBASIC7.26□□□□□ -1.25
COL5A3P25940 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC7.26□□□□□ -1.25
COL5A3P25940 OR11J2P-201ENST00000555298 907 ntBASIC7.26□□□□□ -1.25
COL5A3P25940 MIR4436B2-201ENST00000581415 91 ntBASIC7.26□□□□□ -1.25
COL5A3P25940 MIR4436B1-201ENST00000583272 91 ntBASIC7.26□□□□□ -1.25
COL5A3P25940 AC008115.3-201ENST00000614874 549 ntBASIC7.26□□□□□ -1.25
COL5A3P25940 MYPN-205ENST00000613327 6116 ntTSL 1 (best) BASIC7.26□□□□□ -1.25
COL5A3P25940 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL5A3P25940 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC7.26□□□□□ -1.25
COL5A3P25940 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL5A3P25940 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL5A3P25940 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC7.26□□□□□ -1.25
COL5A3P25940 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
COL5A3P25940 CDON-201ENST00000263577 4186 ntAPPRIS P3 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL5A3P25940 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL5A3P25940 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC7.25□□□□□ -1.25
COL5A3P25940 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC7.25□□□□□ -1.25
COL5A3P25940 CLASP1-203ENST00000409078 8002 ntAPPRIS P1 TSL 5 BASIC7.25□□□□□ -1.25
COL5A3P25940 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC7.25□□□□□ -1.25
COL5A3P25940 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL5A3P25940 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
COL5A3P25940 AC103591.2-201ENST00000265259 766 ntBASIC7.25□□□□□ -1.25
COL5A3P25940 AL390774.1-201ENST00000411924 246 ntBASIC7.25□□□□□ -1.25
COL5A3P25940 AC009784.1-201ENST00000426484 460 ntBASIC7.25□□□□□ -1.25
COL5A3P25940 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC7.25□□□□□ -1.25
COL5A3P25940 LDHC-203ENST00000535809 757 ntTSL 5 BASIC7.25□□□□□ -1.25
COL5A3P25940 LDHC-205ENST00000537486 583 ntTSL 5 BASIC7.25□□□□□ -1.25
COL5A3P25940 AL049779.3-201ENST00000557141 606 ntBASIC7.25□□□□□ -1.25
COL5A3P25940 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC7.25□□□□□ -1.25
COL5A3P25940 AL390726.5-202ENST00000564800 256 ntBASIC7.25□□□□□ -1.25
COL5A3P25940 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC7.25□□□□□ -1.25
COL5A3P25940 USF3-201ENST00000316407 13708 ntAPPRIS P2 TSL 5 BASIC7.25□□□□□ -1.25
COL5A3P25940 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL5A3P25940 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL5A3P25940 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL5A3P25940 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL5A3P25940 TANK-205ENST00000405852 2155 ntTSL 5 BASIC7.25□□□□□ -1.25
COL5A3P25940 TMEM170B-201ENST00000379426 8362 ntAPPRIS P1 TSL 4 BASIC7.25□□□□□ -1.25
COL5A3P25940 KIF1B-202ENST00000377081 8746 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL5A3P25940 DOCK8-205ENST00000453981 7237 ntTSL 5 BASIC7.25□□□□□ -1.25
COL5A3P25940 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL5A3P25940 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC7.25□□□□□ -1.25
COL5A3P25940 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL5A3P25940 COL24A1-201ENST00000370571 6825 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL5A3P25940 USP6-201ENST00000250066 7976 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL5A3P25940 AL121768.1-201ENST00000613917 2544 ntBASIC7.24□□□□□ -1.25
COL5A3P25940 ERCC4-201ENST00000311895 6758 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL5A3P25940 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL5A3P25940 AC005294.1-201ENST00000355509 281 ntBASIC7.24□□□□□ -1.25
COL5A3P25940 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL5A3P25940 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC7.24□□□□□ -1.25
COL5A3P25940 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC7.24□□□□□ -1.25
COL5A3P25940 PSMD10P3-201ENST00000437000 448 ntBASIC7.24□□□□□ -1.25
COL5A3P25940 RPL7L1P3-201ENST00000455249 689 ntBASIC7.24□□□□□ -1.25
COL5A3P25940 AC099521.1-201ENST00000482557 334 ntBASIC7.24□□□□□ -1.25
COL5A3P25940 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC7.24□□□□□ -1.25
COL5A3P25940 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC7.24□□□□□ -1.25
COL5A3P25940 MRPS21P7-201ENST00000566937 238 ntBASIC7.24□□□□□ -1.25
COL5A3P25940 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC7.24□□□□□ -1.25
COL5A3P25940 AC087783.2-201ENST00000605070 562 ntBASIC7.24□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms