Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 COX6B1P2-201ENST00000489624 230 ntBASIC7.25□□□□□ -1.25
COL6A1P12109 RNA5SP340-201ENST00000517132 107 ntBASIC7.25□□□□□ -1.25
COL6A1P12109 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC7.25□□□□□ -1.25
COL6A1P12109 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC7.25□□□□□ -1.25
COL6A1P12109 AC034205.1-201ENST00000520621 638 ntBASIC7.25□□□□□ -1.25
COL6A1P12109 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC7.25□□□□□ -1.25
COL6A1P12109 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC7.25□□□□□ -1.25
COL6A1P12109 HMGN2P47-201ENST00000559378 272 ntBASIC7.25□□□□□ -1.25
COL6A1P12109 AL109741.3-201ENST00000561748 592 ntBASIC7.25□□□□□ -1.25
COL6A1P12109 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC7.25□□□□□ -1.25
COL6A1P12109 AC079148.1-201ENST00000565944 819 ntBASIC7.25□□□□□ -1.25
COL6A1P12109 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC7.25□□□□□ -1.25
COL6A1P12109 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC7.25□□□□□ -1.25
COL6A1P12109 MIR3176-201ENST00000582210 90 ntBASIC7.25□□□□□ -1.25
COL6A1P12109 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC7.25□□□□□ -1.25
COL6A1P12109 AC018926.1-201ENST00000616335 435 ntBASIC7.25□□□□□ -1.25
COL6A1P12109 AC004801.6-201ENST00000616571 978 ntBASIC7.25□□□□□ -1.25
COL6A1P12109 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC7.25□□□□□ -1.25
COL6A1P12109 MIR6826-201ENST00000617808 98 ntBASIC7.25□□□□□ -1.25
COL6A1P12109 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC7.25□□□□□ -1.25
COL6A1P12109 AC018692.2-201ENST00000624130 348 ntBASIC7.25□□□□□ -1.25
COL6A1P12109 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC7.25□□□□□ -1.25
COL6A1P12109 AL157778.1-201ENST00000626665 729 ntTSL 3 BASIC7.25□□□□□ -1.25
COL6A1P12109 CGA-206ENST00000630630 832 ntTSL 2 BASIC7.25□□□□□ -1.25
COL6A1P12109 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC7.25□□□□□ -1.25
COL6A1P12109 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC7.25□□□□□ -1.25
COL6A1P12109 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC7.25□□□□□ -1.25
COL6A1P12109 CREM-203ENST00000344351 1625 ntTSL 2 BASIC7.25□□□□□ -1.25
COL6A1P12109 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC7.25□□□□□ -1.25
COL6A1P12109 PHKB-201ENST00000299167 5464 ntTSL 5 BASIC7.25□□□□□ -1.25
COL6A1P12109 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL6A1P12109 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC7.25□□□□□ -1.25
COL6A1P12109 TMTC2-204ENST00000549919 6211 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL6A1P12109 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL6A1P12109 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC7.25□□□□□ -1.25
COL6A1P12109 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC7.25□□□□□ -1.25
COL6A1P12109 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL6A1P12109 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL6A1P12109 GDPD4-202ENST00000376217 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC7.25□□□□□ -1.25
COL6A1P12109 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL6A1P12109 FBXL21-201ENST00000297158 1305 ntBASIC7.25□□□□□ -1.25
COL6A1P12109 NUMB-232ENST00000560335 1586 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL6A1P12109 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC7.25□□□□□ -1.25
COL6A1P12109 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
COL6A1P12109 BTN3A2-203ENST00000396934 3672 ntAPPRIS ALT2 TSL 2 BASIC7.24□□□□□ -1.25
COL6A1P12109 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL6A1P12109 OVAAL-201ENST00000442621 1489 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
COL6A1P12109 Z83820.1-201ENST00000456978 1499 ntBASIC7.24□□□□□ -1.25
COL6A1P12109 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL6A1P12109 HMBOX1-211ENST00000524238 1731 ntTSL 2 BASIC7.24□□□□□ -1.25
COL6A1P12109 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC7.24□□□□□ -1.25
COL6A1P12109 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC7.24□□□□□ -1.25
COL6A1P12109 ZNF181-204ENST00000492450 5086 ntAPPRIS P3 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL6A1P12109 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL6A1P12109 DNM1L-202ENST00000358214 3229 ntTSL 5 BASIC7.24□□□□□ -1.25
COL6A1P12109 RPL14-201ENST00000338970 7072 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL6A1P12109 BTN3A2-205ENST00000508906 3733 ntAPPRIS ALT2 TSL 2 BASIC7.24□□□□□ -1.25
COL6A1P12109 OR2AG2-202ENST00000641124 4224 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
COL6A1P12109 OR2AG2-203ENST00000641169 4221 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
COL6A1P12109 AL445523.1-201ENST00000451184 1362 ntBASIC7.24□□□□□ -1.25
COL6A1P12109 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC7.24□□□□□ -1.25
COL6A1P12109 EIF2A-202ENST00000406576 1795 ntTSL 2 BASIC7.24□□□□□ -1.25
COL6A1P12109 LINC00861-201ENST00000500989 5330 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
COL6A1P12109 ABLIM1-214ENST00000533213 7606 ntTSL 5 BASIC7.24□□□□□ -1.25
COL6A1P12109 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
COL6A1P12109 THAP9-201ENST00000302236 3808 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL6A1P12109 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL6A1P12109 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC7.24□□□□□ -1.25
COL6A1P12109 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC7.24□□□□□ -1.25
COL6A1P12109 MIR199B-201ENST00000384849 110 ntBASIC7.24□□□□□ -1.25
COL6A1P12109 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
COL6A1P12109 AC096644.3-201ENST00000416788 338 ntBASIC7.24□□□□□ -1.25
COL6A1P12109 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC7.24□□□□□ -1.25
COL6A1P12109 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC7.24□□□□□ -1.25
COL6A1P12109 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC7.24□□□□□ -1.25
COL6A1P12109 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC7.24□□□□□ -1.25
COL6A1P12109 ZNF736P7Y-201ENST00000425158 820 ntBASIC7.24□□□□□ -1.25
COL6A1P12109 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC7.24□□□□□ -1.25
COL6A1P12109 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC7.24□□□□□ -1.25
COL6A1P12109 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC7.24□□□□□ -1.25
COL6A1P12109 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC7.24□□□□□ -1.25
COL6A1P12109 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC7.24□□□□□ -1.25
COL6A1P12109 MIR205HG-206ENST00000440276 539 ntTSL 5 BASIC7.24□□□□□ -1.25
COL6A1P12109 Z99714.1-201ENST00000450463 807 ntBASIC7.24□□□□□ -1.25
COL6A1P12109 SBDSP1-204ENST00000453858 737 ntBASIC7.24□□□□□ -1.25
COL6A1P12109 PPIAP7-201ENST00000454070 489 ntBASIC7.24□□□□□ -1.25
COL6A1P12109 AL122001.1-201ENST00000457027 370 ntBASIC7.24□□□□□ -1.25
COL6A1P12109 RPL12P31-201ENST00000478433 450 ntBASIC7.24□□□□□ -1.25
COL6A1P12109 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
COL6A1P12109 RPL5P23-201ENST00000496040 868 ntBASIC7.24□□□□□ -1.25
COL6A1P12109 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC7.24□□□□□ -1.25
COL6A1P12109 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC7.24□□□□□ -1.25
COL6A1P12109 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC7.24□□□□□ -1.25
COL6A1P12109 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC7.24□□□□□ -1.25
COL6A1P12109 MORF4L1P3-201ENST00000525966 950 ntBASIC7.24□□□□□ -1.25
COL6A1P12109 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC7.24□□□□□ -1.25
COL6A1P12109 AP000620.1-201ENST00000527147 504 ntBASIC7.24□□□□□ -1.25
COL6A1P12109 IFNG-AS1-201ENST00000536914 494 ntTSL 5 BASIC7.24□□□□□ -1.25
COL6A1P12109 SNHG1-212ENST00000539975 955 ntTSL 5 BASIC7.24□□□□□ -1.25
COL6A1P12109 AC016144.1-201ENST00000548175 1087 ntBASIC7.24□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms