Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC5.23□□□□□ -1.57
CDX1P47902 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC5.23□□□□□ -1.57
CDX1P47902 DUX4L52-201ENST00000549363 777 ntBASIC5.23□□□□□ -1.57
CDX1P47902 HNRNPA1P74-201ENST00000560782 835 ntBASIC5.23□□□□□ -1.57
CDX1P47902 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC5.23□□□□□ -1.57
CDX1P47902 LINC01477-201ENST00000566101 1226 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CDX1P47902 TXNP4-201ENST00000575018 310 ntBASIC5.23□□□□□ -1.57
CDX1P47902 DSG1-AS1-202ENST00000578477 588 ntTSL 3 BASIC5.23□□□□□ -1.57
CDX1P47902 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC5.23□□□□□ -1.57
CDX1P47902 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC5.23□□□□□ -1.57
CDX1P47902 AC015911.2-201ENST00000585536 396 ntTSL 3 BASIC5.23□□□□□ -1.57
CDX1P47902 AP002884.5-201ENST00000595053 1132 ntBASIC5.23□□□□□ -1.57
CDX1P47902 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CDX1P47902 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC5.23□□□□□ -1.57
CDX1P47902 AL953862.2-201ENST00000603089 820 ntBASIC5.23□□□□□ -1.57
CDX1P47902 AL390877.1-201ENST00000605704 214 ntBASIC5.23□□□□□ -1.57
CDX1P47902 MALAT1-209ENST00000616691 587 ntTSL 2 BASIC5.23□□□□□ -1.57
CDX1P47902 AL158062.1-201ENST00000619632 745 ntBASIC5.23□□□□□ -1.57
CDX1P47902 AC068213.1-201ENST00000625124 226 ntBASIC5.23□□□□□ -1.57
CDX1P47902 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC5.23□□□□□ -1.57
CDX1P47902 CYBRD1-203ENST00000409484 1493 ntTSL 2 BASIC5.23□□□□□ -1.57
CDX1P47902 AQP4-205ENST00000581374 1586 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CDX1P47902 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
CDX1P47902 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CDX1P47902 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
CDX1P47902 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CDX1P47902 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
CDX1P47902 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC5.23□□□□□ -1.57
CDX1P47902 Z97989.1-201ENST00000531702 2421 ntBASIC5.23□□□□□ -1.57
CDX1P47902 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CDX1P47902 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.23□□□□□ -1.57
CDX1P47902 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CDX1P47902 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
CDX1P47902 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
CDX1P47902 RPL17-C18orf32-203ENST00000584895 1440 ntAPPRIS P1 TSL 3 BASIC5.23□□□□□ -1.57
CDX1P47902 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CDX1P47902 PHF11-215ENST00000488958 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CDX1P47902 RGS22-215ENST00000523437 3975 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CDX1P47902 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
CDX1P47902 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.22□□□□□ -1.57
CDX1P47902 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
CDX1P47902 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CDX1P47902 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.22□□□□□ -1.57
CDX1P47902 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
CDX1P47902 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.22□□□□□ -1.57
CDX1P47902 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CDX1P47902 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CDX1P47902 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
CDX1P47902 IMPA1-202ENST00000311489 1106 ntTSL 2 BASIC5.22□□□□□ -1.57
CDX1P47902 OR4M1-201ENST00000315957 1116 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
CDX1P47902 OR13F1-201ENST00000334726 960 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
CDX1P47902 RNA5SP308-201ENST00000362532 115 ntBASIC5.22□□□□□ -1.57
CDX1P47902 SNORA70.3-201ENST00000365075 132 ntBASIC5.22□□□□□ -1.57
CDX1P47902 RNU1-55P-201ENST00000365510 158 ntBASIC5.22□□□□□ -1.57
CDX1P47902 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CDX1P47902 AL121977.1-201ENST00000401636 979 ntBASIC5.22□□□□□ -1.57
CDX1P47902 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC5.22□□□□□ -1.57
CDX1P47902 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC5.22□□□□□ -1.57
CDX1P47902 GLUD1P9-201ENST00000420997 1173 ntBASIC5.22□□□□□ -1.57
CDX1P47902 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC5.22□□□□□ -1.57
CDX1P47902 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC5.22□□□□□ -1.57
CDX1P47902 CYCSP51-201ENST00000443545 318 ntBASIC5.22□□□□□ -1.57
CDX1P47902 AC129807.1-201ENST00000471614 591 ntTSL 4 BASIC5.22□□□□□ -1.57
CDX1P47902 HESX1-202ENST00000473921 757 ntTSL 5 BASIC5.22□□□□□ -1.57
CDX1P47902 RN7SL561P-201ENST00000488553 281 ntBASIC5.22□□□□□ -1.57
CDX1P47902 DUBR-205ENST00000495228 411 ntTSL 2 BASIC5.22□□□□□ -1.57
CDX1P47902 PCNAP1-201ENST00000505363 709 ntBASIC5.22□□□□□ -1.57
CDX1P47902 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC5.22□□□□□ -1.57
CDX1P47902 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC5.22□□□□□ -1.57
CDX1P47902 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CDX1P47902 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC5.22□□□□□ -1.57
CDX1P47902 AC008708.1-201ENST00000517346 474 ntTSL 3 BASIC5.22□□□□□ -1.57
CDX1P47902 GOLT1B-205ENST00000540141 1055 ntAPPRIS ALT1 TSL 4 BASIC5.22□□□□□ -1.57
CDX1P47902 OLR1-210ENST00000544577 924 ntTSL 5 BASIC5.22□□□□□ -1.57
CDX1P47902 SNRPGP1-201ENST00000553864 222 ntBASIC5.22□□□□□ -1.57
CDX1P47902 AL445383.1-201ENST00000554689 874 ntBASIC5.22□□□□□ -1.57
CDX1P47902 LINC00640-204ENST00000557295 708 ntTSL 5 BASIC5.22□□□□□ -1.57
CDX1P47902 WDR61-205ENST00000558459 884 ntTSL 3 BASIC5.22□□□□□ -1.57
CDX1P47902 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.22□□□□□ -1.57
CDX1P47902 AC091304.4-201ENST00000565703 620 ntBASIC5.22□□□□□ -1.57
CDX1P47902 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC5.22□□□□□ -1.57
CDX1P47902 AC040170.1-201ENST00000602425 564 ntTSL 2 BASIC5.22□□□□□ -1.57
CDX1P47902 AC025857.2-201ENST00000602711 238 ntBASIC5.22□□□□□ -1.57
CDX1P47902 AC091769.2-201ENST00000605385 479 ntTSL 4 BASIC5.22□□□□□ -1.57
CDX1P47902 Z98949.1-213ENST00000608921 856 ntTSL 5 BASIC5.22□□□□□ -1.57
CDX1P47902 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC5.22□□□□□ -1.57
CDX1P47902 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC5.22□□□□□ -1.57
CDX1P47902 AC026367.3-201ENST00000619032 590 ntBASIC5.22□□□□□ -1.57
CDX1P47902 AC061999.1-201ENST00000624454 177 ntBASIC5.22□□□□□ -1.57
CDX1P47902 AL035425.4-201ENST00000624509 1063 ntBASIC5.22□□□□□ -1.57
CDX1P47902 TEX41-255ENST00000626404 610 ntTSL 5 BASIC5.22□□□□□ -1.57
CDX1P47902 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC5.22□□□□□ -1.57
CDX1P47902 AC007603.3-201ENST00000636915 979 ntBASIC5.22□□□□□ -1.57
CDX1P47902 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC5.22□□□□□ -1.57
CDX1P47902 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
CDX1P47902 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
CDX1P47902 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.22□□□□□ -1.57
CDX1P47902 AC015689.2-201ENST00000528172 1738 ntBASIC5.22□□□□□ -1.57
CDX1P47902 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.22□□□□□ -1.57
CDX1P47902 PPP1R11-206ENST00000376773 1640 ntTSL 3 BASIC5.22□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 78.2 ms