Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 MLIP-206ENST00000502396 3102 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
COL5A1P20908 POGK-201ENST00000367875 6254 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
COL5A1P20908 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A1P20908 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A1P20908 LINC02250-201ENST00000422117 2491 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A1P20908 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC5.75□□□□□ -1.49
COL5A1P20908 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC5.75□□□□□ -1.49
COL5A1P20908 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A1P20908 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A1P20908 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
COL5A1P20908 RNA5SP375-201ENST00000362975 119 ntBASIC5.75□□□□□ -1.49
COL5A1P20908 ATP2B4-204ENST00000367218 8918 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A1P20908 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.75□□□□□ -1.49
COL5A1P20908 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC5.75□□□□□ -1.49
COL5A1P20908 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.75□□□□□ -1.49
COL5A1P20908 FABP7P2-201ENST00000429946 379 ntBASIC5.75□□□□□ -1.49
COL5A1P20908 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.75□□□□□ -1.49
COL5A1P20908 AC145423.1-201ENST00000605712 336 ntBASIC5.75□□□□□ -1.49
COL5A1P20908 AC087565.3-203ENST00000641018 837 ntBASIC5.75□□□□□ -1.49
COL5A1P20908 MAPK6-201ENST00000261845 5345 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A1P20908 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A1P20908 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A1P20908 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC5.75□□□□□ -1.49
COL5A1P20908 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A1P20908 TMEM246-203ENST00000374851 5070 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A1P20908 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A1P20908 LINC01616-201ENST00000561816 2280 ntBASIC5.75□□□□□ -1.49
COL5A1P20908 LNPK-201ENST00000272748 7610 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A1P20908 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A1P20908 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
COL5A1P20908 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
COL5A1P20908 IFRD1-216ENST00000535603 3397 ntTSL 2 BASIC5.75□□□□□ -1.49
COL5A1P20908 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 AC001226.2-204ENST00000638101 2645 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
COL5A1P20908 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 ODF2L-203ENST00000359242 7560 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.74□□□□□ -1.49
COL5A1P20908 CTNND1-202ENST00000361332 6295 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC5.74□□□□□ -1.49
COL5A1P20908 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC5.74□□□□□ -1.49
COL5A1P20908 SNORA56-201ENST00000383966 129 ntBASIC5.74□□□□□ -1.49
COL5A1P20908 AL022237.1-201ENST00000446663 358 ntBASIC5.74□□□□□ -1.49
COL5A1P20908 AL022319.1-201ENST00000458183 1167 ntBASIC5.74□□□□□ -1.49
COL5A1P20908 AL157777.1-201ENST00000468100 304 ntBASIC5.74□□□□□ -1.49
COL5A1P20908 RN7SKP288-201ENST00000516227 268 ntBASIC5.74□□□□□ -1.49
COL5A1P20908 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.74□□□□□ -1.49
COL5A1P20908 APPL2-203ENST00000546731 684 ntTSL 2 BASIC5.74□□□□□ -1.49
COL5A1P20908 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.74□□□□□ -1.49
COL5A1P20908 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC5.74□□□□□ -1.49
COL5A1P20908 MIR1269B-201ENST00000580405 75 ntBASIC5.74□□□□□ -1.49
COL5A1P20908 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.74□□□□□ -1.49
COL5A1P20908 AC037198.3-201ENST00000616754 526 ntBASIC5.74□□□□□ -1.49
COL5A1P20908 AC068870.2-201ENST00000620635 389 ntBASIC5.74□□□□□ -1.49
COL5A1P20908 NRCAM-205ENST00000413765 6406 ntTSL 2 BASIC5.74□□□□□ -1.49
COL5A1P20908 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
COL5A1P20908 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.74□□□□□ -1.49
COL5A1P20908 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
COL5A1P20908 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
COL5A1P20908 ASB4-202ENST00000325885 3825 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 DDX24-209ENST00000621632 5612 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 ZCCHC2-204ENST00000586834 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 AL359976.1-201ENST00000418655 3528 ntBASIC5.74□□□□□ -1.49
COL5A1P20908 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC5.74□□□□□ -1.49
COL5A1P20908 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.74□□□□□ -1.49
COL5A1P20908 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC5.74□□□□□ -1.49
COL5A1P20908 RPA2P2-201ENST00000419698 796 ntBASIC5.74□□□□□ -1.49
COL5A1P20908 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 AL662874.1-201ENST00000426065 230 ntBASIC5.74□□□□□ -1.49
COL5A1P20908 AC009784.1-201ENST00000426484 460 ntBASIC5.74□□□□□ -1.49
COL5A1P20908 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC5.74□□□□□ -1.49
COL5A1P20908 SPRYD7P1-201ENST00000443861 570 ntBASIC5.74□□□□□ -1.49
COL5A1P20908 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.74□□□□□ -1.49
COL5A1P20908 AC103563.5-201ENST00000455643 364 ntBASIC5.74□□□□□ -1.49
COL5A1P20908 AC073594.1-201ENST00000462065 364 ntBASIC5.74□□□□□ -1.49
COL5A1P20908 LINC02218-201ENST00000503267 529 ntTSL 2 BASIC5.74□□□□□ -1.49
COL5A1P20908 OR4A46P-201ENST00000527255 933 ntBASIC5.74□□□□□ -1.49
COL5A1P20908 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC5.74□□□□□ -1.49
COL5A1P20908 AC007683.2-201ENST00000624681 714 ntBASIC5.74□□□□□ -1.49
COL5A1P20908 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A1P20908 NDUFA4-201ENST00000339600 2130 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL5A1P20908 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC5.73□□□□□ -1.49
COL5A1P20908 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL5A1P20908 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL5A1P20908 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC5.73□□□□□ -1.49
COL5A1P20908 FNDC7-201ENST00000370017 3332 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
COL5A1P20908 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
COL5A1P20908 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 133.1 ms