Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 RPL38P3-201ENST00000484463 213 ntBASIC2.53□□□□□ -2
USH2AO75445 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC2.53□□□□□ -2
USH2AO75445 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC2.53□□□□□ -2
USH2AO75445 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC2.53□□□□□ -2
USH2AO75445 AC084824.1-201ENST00000550917 1005 ntBASIC2.53□□□□□ -2
USH2AO75445 AC026367.2-201ENST00000610630 553 ntBASIC2.53□□□□□ -2
USH2AO75445 AC024023.1-201ENST00000624530 922 ntBASIC2.53□□□□□ -2
USH2AO75445 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC2.53□□□□□ -2
USH2AO75445 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 ARMCX5-206ENST00000604957 4640 ntAPPRIS P1 BASIC2.53□□□□□ -2
USH2AO75445 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 PTCH1-206ENST00000421141 7659 ntTSL 5 BASIC2.53□□□□□ -2
USH2AO75445 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC2.53□□□□□ -2
USH2AO75445 SCN4A-201ENST00000435607 7805 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC2.53□□□□□ -2
USH2AO75445 AR-208ENST00000612452 10676 ntTSL 5 BASIC2.53□□□□□ -2
USH2AO75445 TULP4-201ENST00000367094 5170 ntTSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 DOCK4-216ENST00000494651 3282 ntTSL 5 BASIC2.53□□□□□ -2
USH2AO75445 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 RAB3GAP2-202ENST00000358951 7257 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 ZNF733P-202ENST00000444809 1573 ntBASIC2.53□□□□□ -2
USH2AO75445 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC2.53□□□□□ -2
USH2AO75445 OIP5-AS1-201ENST00000500949 8829 ntTSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 NPVF-201ENST00000222674 1190 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 AC211486.3-201ENST00000412694 621 ntBASIC2.53□□□□□ -2
USH2AO75445 BRWD1-IT1-201ENST00000435608 489 ntTSL 3 BASIC2.53□□□□□ -2
USH2AO75445 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC2.53□□□□□ -2
USH2AO75445 AC015864.1-201ENST00000496512 544 ntBASIC2.53□□□□□ -2
USH2AO75445 MIR4270-201ENST00000581799 70 ntBASIC2.53□□□□□ -2
USH2AO75445 TSHZ2-203ENST00000603338 3803 ntTSL 2 BASIC2.53□□□□□ -2
USH2AO75445 AL031320.1-201ENST00000604177 357 ntBASIC2.53□□□□□ -2
USH2AO75445 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC2.53□□□□□ -2
USH2AO75445 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC2.53□□□□□ -2
USH2AO75445 VIL1-201ENST00000248444 6531 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 SEC16A-206ENST00000431893 6465 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 CASP8-203ENST00000323492 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 AC022819.1-201ENST00000563495 3910 ntBASIC2.53□□□□□ -2
USH2AO75445 NCKAP5-204ENST00000409213 2390 ntAPPRIS ALT2 TSL 5 BASIC2.53□□□□□ -2
USH2AO75445 BAZ2A-211ENST00000549884 6050 ntAPPRIS ALT2 TSL 2 BASIC2.53□□□□□ -2
USH2AO75445 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 NRP1-201ENST00000265371 5882 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
USH2AO75445 EEF2K-201ENST00000263026 7388 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2
USH2AO75445 ZNF286A-221ENST00000593105 5222 ntTSL 3 BASIC2.53□□□□□ -2
USH2AO75445 FKBP15-201ENST00000238256 4336 ntAPPRIS P2 TSL 1 (best) BASIC2.53□□□□□ -2
USH2AO75445 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
USH2AO75445 ZNF337-202ENST00000376436 3613 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2.01
USH2AO75445 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC2.53□□□□□ -2.01
USH2AO75445 HLTF-203ENST00000465259 5306 ntAPPRIS ALT1 TSL 1 (best) BASIC2.53□□□□□ -2.01
USH2AO75445 CUL4A-212ENST00000617546 5666 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
USH2AO75445 AL133388.1-201ENST00000404509 287 ntBASIC2.53□□□□□ -2.01
USH2AO75445 DNAJA1P4-201ENST00000406473 1166 ntBASIC2.53□□□□□ -2.01
USH2AO75445 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
USH2AO75445 snoU13.24-201ENST00000458998 104 ntBASIC2.53□□□□□ -2.01
USH2AO75445 AC091167.1-201ENST00000492017 396 ntBASIC2.53□□□□□ -2.01
USH2AO75445 AC139365.2-201ENST00000517972 253 ntBASIC2.53□□□□□ -2.01
USH2AO75445 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC2.53□□□□□ -2.01
USH2AO75445 AC078878.1-201ENST00000539832 958 ntBASIC2.53□□□□□ -2.01
USH2AO75445 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC2.53□□□□□ -2.01
USH2AO75445 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC2.53□□□□□ -2.01
USH2AO75445 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC2.53□□□□□ -2.01
USH2AO75445 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC2.53□□□□□ -2.01
USH2AO75445 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC2.53□□□□□ -2.01
USH2AO75445 GARSP1-201ENST00000570895 719 ntBASIC2.53□□□□□ -2.01
USH2AO75445 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC2.53□□□□□ -2.01
USH2AO75445 MASP1-203ENST00000337774 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2.01
USH2AO75445 NFIA-207ENST00000403491 9487 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2.01
USH2AO75445 AC138969.2-201ENST00000532739 9932 ntBASIC2.53□□□□□ -2.01
USH2AO75445 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC2.53□□□□□ -2.01
USH2AO75445 ZFHX2-202ENST00000419474 9182 ntAPPRIS P1 TSL 5 BASIC2.53□□□□□ -2.01
USH2AO75445 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
USH2AO75445 AMOTL1-203ENST00000433060 8970 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2.01
USH2AO75445 RNF165-201ENST00000269439 7596 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
USH2AO75445 FMN1-211ENST00000561249 4251 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
USH2AO75445 PHACTR1-201ENST00000332995 5332 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
USH2AO75445 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC2.52□□□□□ -2.01
USH2AO75445 DSTYK-201ENST00000367161 7739 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
USH2AO75445 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
USH2AO75445 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
USH2AO75445 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
USH2AO75445 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC2.52□□□□□ -2.01
USH2AO75445 FGA-201ENST00000302053 3678 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
USH2AO75445 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
USH2AO75445 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC2.52□□□□□ -2.01
USH2AO75445 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
USH2AO75445 RNA5SP332-201ENST00000391063 115 ntBASIC2.52□□□□□ -2.01
USH2AO75445 AL359265.2-201ENST00000434367 631 ntBASIC2.52□□□□□ -2.01
USH2AO75445 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC2.52□□□□□ -2.01
USH2AO75445 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC2.52□□□□□ -2.01
USH2AO75445 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC2.52□□□□□ -2.01
USH2AO75445 AC069200.1-201ENST00000609511 323 ntBASIC2.52□□□□□ -2.01
USH2AO75445 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
USH2AO75445 AC130456.6-201ENST00000623745 765 ntBASIC2.52□□□□□ -2.01
USH2AO75445 IL22RA2-203ENST00000349184 2801 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
USH2AO75445 ADAMTS3-204ENST00000622135 4479 ntAPPRIS P1 TSL 2 BASIC2.52□□□□□ -2.01
USH2AO75445 GRIN2A-205ENST00000535259 4118 ntTSL 5 BASIC2.52□□□□□ -2.01
USH2AO75445 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC2.52□□□□□ -2.01
USH2AO75445 RASSF2-202ENST00000379400 5427 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms