Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LMX1BO60663 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC5.49□□□□□ -1.53
LMX1BO60663 AL133399.1-201ENST00000527476 298 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.49□□□□□ -1.53
LMX1BO60663 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC5.49□□□□□ -1.53
LMX1BO60663 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC5.49□□□□□ -1.53
LMX1BO60663 RPL41P2-201ENST00000544920 409 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC5.49□□□□□ -1.53
LMX1BO60663 AL731537.2-201ENST00000561565 951 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC5.49□□□□□ -1.53
LMX1BO60663 AC103810.5-201ENST00000581622 560 ntTSL 5 BASIC5.49□□□□□ -1.53
LMX1BO60663 AC027229.1-201ENST00000583887 253 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 CHMP1B-AS1-201ENST00000586474 553 ntTSL 4 BASIC5.49□□□□□ -1.53
LMX1BO60663 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC5.49□□□□□ -1.53
LMX1BO60663 AC009303.3-201ENST00000591103 736 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 AC004805.3-201ENST00000603178 310 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 IGKV2OR2-1-201ENST00000605129 304 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 LY86-AS1-206ENST00000607278 677 ntTSL 3 BASIC5.49□□□□□ -1.53
LMX1BO60663 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC5.49□□□□□ -1.53
LMX1BO60663 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC5.49□□□□□ -1.53
LMX1BO60663 AC009452.1-201ENST00000640823 606 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
LMX1BO60663 GKN2-202ENST00000481498 1498 ntTSL 2 BASIC5.49□□□□□ -1.53
LMX1BO60663 ALKBH8-205ENST00000428149 4079 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMX1BO60663 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
LMX1BO60663 AC027279.1-201ENST00000568885 4284 ntBASIC5.49□□□□□ -1.53
LMX1BO60663 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5.49□□□□□ -1.53
LMX1BO60663 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC5.49□□□□□ -1.53
LMX1BO60663 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LMX1BO60663 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMX1BO60663 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
LMX1BO60663 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC5.49□□□□□ -1.53
LMX1BO60663 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LMX1BO60663 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC5.49□□□□□ -1.53
LMX1BO60663 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LMX1BO60663 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LMX1BO60663 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LMX1BO60663 SHQ1P1-201ENST00000437111 1544 ntBASIC5.48□□□□□ -1.53
LMX1BO60663 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC5.48□□□□□ -1.53
LMX1BO60663 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LMX1BO60663 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LMX1BO60663 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
LMX1BO60663 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LMX1BO60663 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LMX1BO60663 RPL31P11-201ENST00000426558 1558 ntBASIC5.48□□□□□ -1.53
LMX1BO60663 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC5.48□□□□□ -1.53
LMX1BO60663 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC5.48□□□□□ -1.53
LMX1BO60663 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LMX1BO60663 RPL7AP14-201ENST00000424041 802 ntBASIC5.48□□□□□ -1.53
LMX1BO60663 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC5.48□□□□□ -1.53
LMX1BO60663 GTF3AP6-201ENST00000432585 986 ntBASIC5.48□□□□□ -1.53
LMX1BO60663 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC5.48□□□□□ -1.53
LMX1BO60663 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC5.48□□□□□ -1.53
LMX1BO60663 AC079763.1-201ENST00000441295 738 ntTSL 3 BASIC5.48□□□□□ -1.53
LMX1BO60663 GTF2IP14-201ENST00000441415 586 ntBASIC5.48□□□□□ -1.53
LMX1BO60663 VN1R48P-201ENST00000448149 1036 ntBASIC5.48□□□□□ -1.53
LMX1BO60663 HMGB1P7-201ENST00000450921 612 ntBASIC5.48□□□□□ -1.53
LMX1BO60663 VPS25P1-201ENST00000455691 508 ntBASIC5.48□□□□□ -1.53
LMX1BO60663 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC5.48□□□□□ -1.53
LMX1BO60663 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC5.48□□□□□ -1.53
LMX1BO60663 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC5.48□□□□□ -1.53
LMX1BO60663 RPL37AP8-201ENST00000494116 276 ntBASIC5.48□□□□□ -1.53
LMX1BO60663 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LMX1BO60663 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC5.48□□□□□ -1.53
LMX1BO60663 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC5.48□□□□□ -1.53
LMX1BO60663 CYCSP25-201ENST00000525280 316 ntBASIC5.48□□□□□ -1.53
LMX1BO60663 NPIPB14P-203ENST00000532298 987 ntBASIC5.48□□□□□ -1.53
LMX1BO60663 EBF2-204ENST00000535548 1017 ntTSL 2 BASIC5.48□□□□□ -1.53
LMX1BO60663 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC5.48□□□□□ -1.53
LMX1BO60663 AL049836.2-201ENST00000553318 513 ntTSL 5 BASIC5.48□□□□□ -1.53
LMX1BO60663 AC007494.1-201ENST00000562293 760 ntBASIC5.48□□□□□ -1.53
LMX1BO60663 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC5.48□□□□□ -1.53
LMX1BO60663 PRELID3BP3-201ENST00000584963 545 ntBASIC5.48□□□□□ -1.53
LMX1BO60663 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC5.48□□□□□ -1.53
LMX1BO60663 AC007100.1-201ENST00000606382 478 ntTSL 5 BASIC5.48□□□□□ -1.53
LMX1BO60663 AL365181.4-201ENST00000609800 547 ntBASIC5.48□□□□□ -1.53
LMX1BO60663 PCA3_2.1-201ENST00000612507 409 ntBASIC5.48□□□□□ -1.53
LMX1BO60663 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LMX1BO60663 AC091948.2-201ENST00000636510 279 ntBASIC5.48□□□□□ -1.53
LMX1BO60663 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC5.48□□□□□ -1.53
LMX1BO60663 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LMX1BO60663 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
LMX1BO60663 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LMX1BO60663 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LMX1BO60663 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.48□□□□□ -1.53
LMX1BO60663 AC125238.2-201ENST00000430003 1440 ntBASIC5.48□□□□□ -1.53
LMX1BO60663 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LMX1BO60663 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
LMX1BO60663 SLC26A5-205ENST00000393723 2174 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LMX1BO60663 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC5.48□□□□□ -1.53
LMX1BO60663 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LMX1BO60663 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC5.47□□□□□ -1.53
LMX1BO60663 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
LMX1BO60663 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC5.47□□□□□ -1.53
LMX1BO60663 AC114876.1-201ENST00000490962 1366 ntBASIC5.47□□□□□ -1.53
LMX1BO60663 NAT1-209ENST00000541942 1948 ntAPPRIS P1 TSL 3 BASIC5.47□□□□□ -1.53
LMX1BO60663 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LMX1BO60663 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LMX1BO60663 RNU1-84P-201ENST00000365447 164 ntBASIC5.47□□□□□ -1.53
LMX1BO60663 MIR433-201ENST00000384837 93 ntBASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms