Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 RN7SL654P-201ENST00000479178 292 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 LINC02082-201ENST00000484765 710 ntTSL 2 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 ARL4AP1-201ENST00000503220 705 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 HMGB3P13-201ENST00000511263 607 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 TOMM22P4-201ENST00000511318 336 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 DCSTAMP-203ENST00000517991 949 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC091820.1-201ENST00000523497 648 ntTSL 4 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 OR5M6P-201ENST00000530227 937 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AP001257.1-201ENST00000533106 385 ntTSL 3 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 RPA2P3-201ENST00000533268 770 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 DAZAP2-208ENST00000549555 872 ntTSL 2 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC007346.2-201ENST00000564816 892 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 C16orf62-224ENST00000567245 573 ntTSL 5 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AL163952.1-202ENST00000569625 600 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 MIR3189-201ENST00000578735 73 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC015688.5-201ENST00000584605 603 ntAPPRIS P5 TSL 2 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC135178.4-201ENST00000585275 548 ntTSL 2 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 NPIPB1P-202ENST00000588786 828 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC020916.2-201ENST00000591242 360 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 OR5AH1P-201ENST00000595968 283 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC099777.1-201ENST00000603779 1070 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 RPL17P3-201ENST00000605695 525 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC007663.4-201ENST00000608275 631 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC103974.2-201ENST00000611319 778 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 LINC01742-201ENST00000616333 628 ntTSL 3 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC009704.2-201ENST00000618739 483 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC127381.3-201ENST00000622901 303 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC015871.5-202ENST00000623252 701 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC110769.3-201ENST00000624567 1173 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 LINC00251-201ENST00000627569 1055 ntTSL 3 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC104073.4-201ENST00000632111 598 ntTSL 2 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC016582.3-206ENST00000636547 207 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 GOSR2-222ENST00000639031 885 ntTSL 3 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 UGP2-232ENST00000640075 567 ntTSL 5 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC079298.1-201ENST00000625026 1619 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC102941.1-201ENST00000567616 1537 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 AC092435.4-201ENST00000623012 4159 ntBASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHKB-CPT1BH3BT56 ZNF806-201ENST00000438300 1774 ntBASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 OR4G1P-202ENST00000641173 1788 ntBASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 NGDN-201ENST00000397154 2204 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 DEUP1-209ENST00000531792 1656 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 PHF11-201ENST00000357596 1471 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 AC108463.3-201ENST00000603748 1482 ntBASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 PPP1R9A-202ENST00000340694 9689 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 GNPAT-201ENST00000366647 2643 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 AL442071.1-201ENST00000289890 558 ntTSL 3 BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 TRIM69-202ENST00000338264 1222 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 RNU1-38P-201ENST00000362817 144 ntBASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 C22orf15-202ENST00000382821 646 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 U3.34-201ENST00000408198 212 ntBASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 AC023469.1-201ENST00000409243 469 ntTSL 3 BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 UNC50-203ENST00000409347 1276 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 AL157932.1-201ENST00000413246 363 ntTSL 3 BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 EIF4A1P13-201ENST00000415667 230 ntBASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 AC011999.1-201ENST00000424794 1024 ntBASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 AC146944.2-202ENST00000425529 658 ntTSL 3 BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 Z83838.1-201ENST00000431036 925 ntBASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 HBBP1-201ENST00000433329 439 ntBASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 AC083939.1-201ENST00000445475 126 ntBASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 NPM1P39-201ENST00000449818 867 ntBASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 OR52E3P-201ENST00000452083 936 ntBASIC3.17□□□□□ -1.9
CHKB-CPT1BH3BT56 PSAT1P4-201ENST00000466500 526 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms