Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
HLA-DMBP28068 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HLA-DMBP28068 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HLA-DMBP28068 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HLA-DMBP28068 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HLA-DMBP28068 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC4.67□□□□□ -1.66
HLA-DMBP28068 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HLA-DMBP28068 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
HLA-DMBP28068 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HLA-DMBP28068 ARHGEF38-201ENST00000265154 1437 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HLA-DMBP28068 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 GTSF1-209ENST00000552397 1621 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HLA-DMBP28068 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 RNA5SP375-201ENST00000362975 119 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 RNA5-8SP5-201ENST00000365304 152 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 RAB5CP1-201ENST00000395972 580 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 RPL23AP17-201ENST00000401064 499 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 VN1R12P-201ENST00000403778 876 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 RN7SKP86-201ENST00000410454 332 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 RN7SKP121-201ENST00000410842 305 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 DPPA2P2-201ENST00000418220 897 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 OSTCP4-201ENST00000424397 449 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 AC092651.1-201ENST00000426110 312 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 AC112492.2-201ENST00000432774 1030 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 HNRNPA1P18-201ENST00000433537 927 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 CXCR2P1-202ENST00000443392 1074 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 AL133351.3-201ENST00000454998 193 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 RN7SL643P-201ENST00000471845 291 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 SOX2-OT-210ENST00000487240 751 ntTSL 5 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 AP001858.2-201ENST00000536213 601 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 AC008055.1-201ENST00000547032 609 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 AL589765.6-201ENST00000601909 549 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 AP000654.1-201ENST00000602510 1192 ntTSL 5 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 AC069234.4-201ENST00000621276 412 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 MIR6806-201ENST00000622141 64 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 UBA3-213ENST00000631029 123 ntTSL 5 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 AC015799.1-201ENST00000622996 3122 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HLA-DMBP28068 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HLA-DMBP28068 AL449283.1-201ENST00000602631 3403 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 WDR95P-201ENST00000425638 1542 ntBASIC4.66□□□□□ -1.66
HLA-DMBP28068 RANBP3L-204ENST00000515759 1532 ntTSL 2 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
HLA-DMBP28068 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HLA-DMBP28068 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC4.66□□□□□ -1.66
HLA-DMBP28068 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
HLA-DMBP28068 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
HLA-DMBP28068 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
HLA-DMBP28068 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC4.65□□□□□ -1.66
HLA-DMBP28068 AL442128.2-201ENST00000620246 1824 ntBASIC4.65□□□□□ -1.66
HLA-DMBP28068 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
HLA-DMBP28068 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
HLA-DMBP28068 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC4.65□□□□□ -1.67
HLA-DMBP28068 RPL11P4-201ENST00000332269 436 ntBASIC4.65□□□□□ -1.67
HLA-DMBP28068 RNU1-49P-201ENST00000363468 159 ntBASIC4.65□□□□□ -1.67
HLA-DMBP28068 RNA5SP77-201ENST00000365394 120 ntBASIC4.65□□□□□ -1.67
HLA-DMBP28068 TINAG-203ENST00000370869 782 ntTSL 3 BASIC4.65□□□□□ -1.67
HLA-DMBP28068 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC4.65□□□□□ -1.67
HLA-DMBP28068 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
HLA-DMBP28068 AL157702.1-201ENST00000398764 426 ntBASIC4.65□□□□□ -1.67
HLA-DMBP28068 RPS26P38-201ENST00000414476 348 ntBASIC4.65□□□□□ -1.67
HLA-DMBP28068 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC4.65□□□□□ -1.67
HLA-DMBP28068 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC4.65□□□□□ -1.67
HLA-DMBP28068 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC4.65□□□□□ -1.67
HLA-DMBP28068 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC4.65□□□□□ -1.67
HLA-DMBP28068 AL731534.1-201ENST00000434711 269 ntBASIC4.65□□□□□ -1.67
HLA-DMBP28068 AC136489.1-203ENST00000450246 736 ntTSL 5 BASIC4.65□□□□□ -1.67
HLA-DMBP28068 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC4.65□□□□□ -1.67
HLA-DMBP28068 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC4.65□□□□□ -1.67
HLA-DMBP28068 OR7E22P-201ENST00000478335 1035 ntBASIC4.65□□□□□ -1.67
HLA-DMBP28068 AC090058.1-201ENST00000498788 435 ntBASIC4.65□□□□□ -1.67
HLA-DMBP28068 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
HLA-DMBP28068 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC4.65□□□□□ -1.67
HLA-DMBP28068 OR4D12P-201ENST00000509361 911 ntBASIC4.65□□□□□ -1.67
HLA-DMBP28068 AC108063.1-201ENST00000513586 414 ntTSL 3 BASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms