Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 EXOC7-220ENST00000607838 3353 ntTSL 5 BASIC8.54□□□□□ -1.04
VPS9D1Q9Y2B5 PLEKHM3-202ENST00000427836 9807 ntAPPRIS P1 TSL 5 BASIC8.54□□□□□ -1.04
VPS9D1Q9Y2B5 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC8.54□□□□□ -1.04
VPS9D1Q9Y2B5 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC8.54□□□□□ -1.04
VPS9D1Q9Y2B5 AC068733.1-202ENST00000531479 2456 ntBASIC8.54□□□□□ -1.04
VPS9D1Q9Y2B5 PDPR-210ENST00000568530 7223 ntAPPRIS P1 TSL 1 (best) BASIC8.54□□□□□ -1.04
VPS9D1Q9Y2B5 NR1I3-202ENST00000367980 1403 ntTSL 5 BASIC8.54□□□□□ -1.04
VPS9D1Q9Y2B5 KIAA1217-202ENST00000376451 7383 ntTSL 1 (best) BASIC8.54□□□□□ -1.04
VPS9D1Q9Y2B5 AC098657.2-201ENST00000567886 1976 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 AC004988.1-201ENST00000415237 1771 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 HNRNPDL-204ENST00000507721 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 SOX9-AS1-217ENST00000623935 1563 ntTSL 5 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 OR1S1-202ENST00000641544 1474 ntAPPRIS P1 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 AC021242.1-201ENST00000507315 2035 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 OR8B9P-202ENST00000642028 5216 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 CASP8-205ENST00000358485 2930 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 OR11H4-201ENST00000315409 1082 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 SNORD116-29-201ENST00000384516 83 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 MIR637-201ENST00000385000 99 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 U3.23-201ENST00000391132 200 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 RPL32P23-201ENST00000397237 405 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 RNU2-42P-201ENST00000410697 113 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 RNA5SP221-201ENST00000411271 103 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 HMGN1P34-201ENST00000413023 290 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 MTND4LP17-201ENST00000414607 293 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 CYCSP5-201ENST00000415043 297 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 ISX-AS1-201ENST00000427881 202 ntTSL 3 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 AL606804.1-201ENST00000435333 538 ntTSL 3 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 NQO1-204ENST00000439109 924 ntTSL 2 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 Z69666.1-201ENST00000445733 801 ntTSL 3 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 AL590365.1-201ENST00000450788 243 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 MED28P8-201ENST00000454831 521 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 DEFA10P-201ENST00000455014 288 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 AC083798.1-201ENST00000472671 131 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 DUBR-205ENST00000495228 411 ntTSL 2 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 DYNLL1P6-201ENST00000503440 264 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 AC025674.1-201ENST00000507074 324 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 KCTD9P2-201ENST00000512203 1013 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 LINC00681-201ENST00000530150 504 ntTSL 2 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 AP000820.1-201ENST00000545912 506 ntTSL 3 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 RPL21P5-201ENST00000554662 472 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 FRG2JP-201ENST00000568299 832 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 AC125421.2-201ENST00000580370 583 ntTSL 4 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 NAPA-AS1-202ENST00000594367 630 ntTSL 2 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 LINC00854-204ENST00000594691 649 ntAPPRIS P5 TSL 5 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 AC243960.5-201ENST00000597858 255 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 RPL17P3-201ENST00000605695 525 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 RN7SKP290-201ENST00000606842 195 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 Metazoa_SRP.29-201ENST00000616220 280 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 AC078909.2-201ENST00000620584 398 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 AC009120.2-201ENST00000620711 522 ntTSL 3 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 ZNF410-225ENST00000639051 936 ntTSL 5 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 AC016582.1-201ENST00000592640 1716 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 ZNF502-204ENST00000449836 3173 ntAPPRIS P1 TSL 3 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 LNX1-201ENST00000263925 2953 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 ACLY-201ENST00000352035 4339 ntAPPRIS P4 TSL 1 (best) BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 CHRDL1-203ENST00000394797 2413 ntAPPRIS P3 TSL 5 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 ZNF225-204ENST00000590612 2404 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 PTPN3-201ENST00000262539 6832 ntTSL 5 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 IBSP-201ENST00000226284 1546 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 FNDC3B-203ENST00000416957 3684 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 TRIM66-202ENST00000402157 10086 ntAPPRIS P5 TSL 5 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 ADAM7-203ENST00000441335 1417 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 RBPJP7-201ENST00000442803 1447 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 RBPJP5-201ENST00000449433 1447 ntBASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 LRIG2-201ENST00000361127 11555 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 UNC79-206ENST00000621021 7377 ntAPPRIS P2 TSL 5 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 ZNF790-208ENST00000615484 2451 ntAPPRIS P1 TSL 5 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 GSTM4-203ENST00000369833 3990 ntTSL 5 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 SUPT16H-201ENST00000216297 4684 ntAPPRIS P1 TSL 1 (best) BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 ARHGAP11A-202ENST00000543522 3152 ntTSL 2 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 FGG-201ENST00000336098 1659 ntTSL 2 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 L3MBTL4-203ENST00000400105 3546 ntAPPRIS P1 TSL 2 BASIC8.53□□□□□ -1.04
VPS9D1Q9Y2B5 DSG3-201ENST00000257189 5525 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.04
VPS9D1Q9Y2B5 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC8.52□□□□□ -1.04
VPS9D1Q9Y2B5 GC-208ENST00000513476 1567 ntTSL 5 BASIC8.52□□□□□ -1.04
VPS9D1Q9Y2B5 DCN-220ENST00000552962 1930 ntAPPRIS P1 TSL 5 BASIC8.52□□□□□ -1.04
VPS9D1Q9Y2B5 HELQ-201ENST00000295488 3579 ntAPPRIS P1 TSL 1 (best) BASIC8.52□□□□□ -1.04
VPS9D1Q9Y2B5 AL121936.1-201ENST00000641660 2884 ntBASIC8.52□□□□□ -1.04
VPS9D1Q9Y2B5 IL5RA-203ENST00000383846 1828 ntAPPRIS ALT2 TSL 1 (best) BASIC8.52□□□□□ -1.04
VPS9D1Q9Y2B5 ATXN3-203ENST00000393287 6770 ntTSL 1 (best) BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 UBE2V1-223ENST00000617119 2432 ntTSL 4 BASIC8.52□□□□□ -1.05
VPS9D1Q9Y2B5 MAGEE1-201ENST00000361470 3630 ntAPPRIS P1 BASIC8.52□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 80.2 ms